Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g00062 | ATGGCTACTTTAAACTTAGGCTCTGCTTCTCACTTTGTTGACCAGCTTCAGCAACGCCCTGATCTCCACCTAGAATCTCCCCCAACTTCTGACCATGTCAACCACTTCAACGGCAGCGGCGGCTCCGGCGGTAGCGGCGATGTCATGGTCCGTCGCCCACGGGGTCGCCCGGCCGGCTCCAAGAACAAGCCCAAGCCACCCGTGATCATCACGCGCGAGAGCGCCAACACACTCCGAGCTCATATCTTGGAGGTCGGTGGTGGATGCGACGTCTTCGAGGCGGTGGCCGGCTATGCTCGACGGCGACAACGGGGGATCTGTGTGTTGAGTGGGAGTGGGATTGTGAATAATGTTAGCTTGCGACAACCGGCGGCTGCTGGATCGGTGTTGACGTTGCAAGGGAGGTTCGAGATTTTGTCGTTGTCGGGATCGTTCCTACCGCCGCCTGCTCCGCCAGGTGCTACCAGTCTTACAATTTTCTTGGCCGGAGGACAAGGGCAAGTGGTGGGAGGGAATGTGGTGGGAGCTTTGATCGCGTCGGGGCCGGTCATCGTCATAGCATCGTCATTTAGTAACGTTGCATACGAGAGGTTGCCGTTGGATGAAGAAGAATTGCCGATGCAGGCGGGTGGAGGCGATGGTGACGGAGGCGACGGTGGCGGTGACGGTCACAACAACCCTTTTCCTGATGCATCTTCGGGTTTGCCGTTTCTAAATCTGCCTATGAACATGCCAAATCAGAATCAATTTTTCGGTTGA | 759 | 56.65 | MATLNLGSASHFVDQLQQRPDLHLESPPTSDHVNHFNGSGGSGGSGDVMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVGGGCDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEELPMQAGGGDGDGGDGGGDGHNNPFPDASSGLPFLNLPMNMPNQNQFFG | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 653729 | 654845 | + | ClCG06G000700.1 | Cla06g00062 | 274254 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g00062 | 252 | ProSiteProfiles | PPC domain profile profile. | 75 | 211 | IPR005175 | - | |
| Cla06g00062 | 252 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 17 | 249 | IPR014476 | GO:0003680 | |
| Cla06g00062 | 252 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 75 | 208 | - | - | |
| Cla06g00062 | 252 | PIRSF | ESCAROLA | 4 | 250 | IPR014476 | GO:0003680 | |
| Cla06g00062 | 252 | CDD | DUF296 | 79 | 162 | IPR005175 | - | |
| Cla06g00062 | 252 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 79 | 192 | IPR005175 | - | |
| Cla06g00062 | 252 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN | 17 | 249 | - | - | |
| Cla06g00062 | 252 | MobiDBLite | consensus disorder prediction | 22 | 68 | - | - | |
| Cla06g00062 | 252 | MobiDBLite | consensus disorder prediction | 205 | 240 | - | - | |
| Cla06g00062 | 252 | Gene3D | - | 78 | 208 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g00325 | Cla-Chr2:3145490 | Cla06g00062 | Cla-Chr6:653729 | 1.89E-62 | dispersed | |
| Cla06g00062 | Cla-Chr6:653729 | Cla09g01139 | Cla-Chr9:12782911 | 5.98E-88 | dispersed | |
| Cla05g00274 | Cla-Chr5:2486749 | Cla06g00062 | Cla-Chr6:653729 | 1.68E-101 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g00062 | - | - | csv:101203160 | 454.521 |