Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00085 ATGGAAGTGCAAGATCATGGTCACATAATTGAAGTATGTGGAGATGTGCAAGCTGTAGGGCCTAGCACTGTGGGAAGTAAAATTTGTGGGGATGCACCCTCTTGTGGATTTTCTGATGCAAAAAGCAGTTCAAAAGATGCAAAGGAGCGATCTGCGTCTATGCGGAAGCTTTGCATAGCAGTTGTTCTCTGCATCGTTTTTATGAGTGTAGAAGTAGTCGGAGGTATTAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCAGATGTTGCTGCTTTTGCCATTTCTTTATTCTCACTCTGGGCCTCTGGTTGGGAGGCAACTCCACGTCAGTCATATGGTTTCTTCCGCATTGAAATACTCGGTGCTCTTGTTTCCATTCAGATGATCTGGCTTCTAGCTGGAATTCTTGTTTACGAAGCTATCGTCCGACTTATAAATGGTCCGGGAGAAGTCAAGGGGTTGCTCATGTTTGCTGTTTCGACATTTGGGTTAGTTGTTAACATAGCTATGGCTCTGCTGCTTGGTCACGAACATGGTCATGCCCATTCTCATGGTCACAGTCATGGACATGGTGAGCATGGCCATGGTCATGGCGGCCATGAACATGGTGATGAAGATCATAGGCATCATCATGGAATAAGTGTGACCACCCACCACCATCACCACCACCACCACCACCATGGAGAAGAGAAGGGAGCTGGCAACGAAGGTGTTGAGCAGCAGCAGCAGCAGCAGCATGACCACAAGGAATCAGTAGCTACACCCTTGCTTGAGAGTTGTGTTGACGACGGAAATCCTTCACGAAAGGTTACCAAGACGCAAAAGAAACAACGAAACATAAACGTACAGGGGGCTTATCTTCATGTACTTGGAGATTCCATCCAAAGCATCGGGGTAATGATCGGCGGGGCAATCATATGGTATAAACCGGAATACAAGATTCTTGATCTGATATGCACCCTCATTTTCTCTGCAATTGTGCTGTGCACAACAATTCAAATGCTTCGAAATATCCTCGAGGTTTTGATGGAGAGCACGCCGCGAGAGGTGGACGCAACAAAGCTTGAGAAGGGTTTGTGCGAGATGGAGGAGGTAGTTGCAATCCATGAACTGCACATATGGGCCATAACTGTTGGGAAGATTCTATTGGCATGCCATGTTATAATAAAGCCAGAGGCAAATGCCGACATGGTATTGGACAAGGTTATTGAGTATATTAGGAGAGAGTACAACATCAGCCATGTCACCATTCAGATAGAGCGCCAGTAG 1284 46.03 MEVQDHGHIIEVCGDVQAVGPSTVGSKICGDAPSCGFSDAKSSSKDAKERSASMRKLCIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSTFGLVVNIAMALLLGHEHGHAHSHGHSHGHGEHGHGHGGHEHGDEDHRHHHGISVTTHHHHHHHHHHGEEKGAGNEGVEQQQQQQHDHKESVATPLLESCVDDGNPSRKVTKTQKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEYKILDLICTLIFSAIVLCTTIQMLRNILEVLMESTPREVDATKLEKGLCEMEEVVAIHELHIWAITVGKILLACHVIIKPEANADMVLDKVIEYIRREYNISHVTIQIERQ 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 868135 875521 - ClCG06G000910.1 Cla06g00085 274277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00085 427 SUPERFAMILY Cation efflux protein transmembrane domain-like 51 349 IPR027469 -
Cla06g00085 427 MobiDBLite consensus disorder prediction 184 256 - -
Cla06g00085 427 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 4 426 - -
Cla06g00085 427 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 356 425 IPR036837 -
Cla06g00085 427 PANTHER METAL TOLERANCE PROTEIN A1 4 426 - -
Cla06g00085 427 TIGRFAM CDF: cation diffusion facilitator family transporter 54 427 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cla06g00085 427 Gene3D Cation efflux protein transmembrane domain 53 347 IPR027469 -
Cla06g00085 427 MobiDBLite consensus disorder prediction 218 233 - -
Cla06g00085 427 Pfam Cation efflux family 58 348 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cla06g00085 427 MobiDBLite consensus disorder prediction 197 217 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00116 Cla-Chr3:1167609 Cla06g00085 Cla-Chr6:868135 1.79E-43 dispersed
Cla06g00085 Cla-Chr6:868135 Cla10g01392 Cla-Chr10:29025280 8.10E-12 dispersed
Cla10g01673 Cla-Chr10:32442638 Cla06g00085 Cla-Chr6:868135 2.36E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00085 K14689 - csv:101213602 636.721