Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00088 ATGGGCAAATGCGAAGATTCAGATTCTTCTGTCAATGGTGAAGAACTTGATGAAATGAGCAAAGTTAGGGTTTCTGAATCAGATGGGGATTTTCTTACTTGGGAGCTCCCACATCCACAAACCAATCGAGCTTCACAGCCACACAAATGGCGTCCACTCTTTTCCGCCTTGTTGTCTCCACCATCTTTCTTGATTTTGATTTCCCTAAATCTCAACCCTTATCATCTCACCCTTCTCGACCCTCCTCAATCCTCCGCCATTTACTCCTCTTTCTCTATCCCCTTCTTTCTCCGTTTTTATTCTCAAACACCCACTTTCCCTTCTTCTTCTCTTCCATTTTCTCTTCCATCTCTCCGGCGGTTGTGTTCTAGCGGCGTTAGGAGTTACTGTTTTTCATCAGAAGTTCATGGGTTCGTTGATCTTCGAGTAGGAAAGGGGGGAAGAGGGGTTTCCGGGAATTTATTGAAAATTGGTGTGGTAGTCCAGAAGGAGAAGATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTCTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCTAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGTACGAAGGATGTTGACAAGGCCAAGATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCCAACTTCACATCCTCATGGGCGGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACGTCACACTCAGGTAGTGCACTTGCATGCAGACCGACGAAGTCGAGCATATCATACAAAAAGCCTAGGATCGAGATGGTTGATGACGAGGAGTTTTTTACGGTTCCTGATCTTGGATGA 1209 45.57 MGKCEDSDSSVNGEELDEMSKVRVSESDGDFLTWELPHPQTNRASQPHKWRPLFSALLSPPSFLILISLNLNPYHLTLLDPPQSSAIYSSFSIPFFLRFYSQTPTFPSSSLPFSLPSLRRLCSSGVRSYCFSSEVHGFVDLRVGKGGRGVSGNLLKIGVVVQKEKMKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKAKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGSALACRPTKSSISYKKPRIEMVDDEEFFTVPDLG 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 893819 899716 - ClCG06G000940.1 Cla06g00088 274280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00088 402 ProSiteProfiles Zinc finger B-box type profile. 217 264 IPR000315 GO:0008270
Cla06g00088 402 MobiDBLite consensus disorder prediction 279 300 - -
Cla06g00088 402 MobiDBLite consensus disorder prediction 1 21 - -
Cla06g00088 402 PANTHER B-BOX ZINC FINGER PROTEIN 24 166 402 - -
Cla06g00088 402 PANTHER B-BOX ZINC FINGER PROTEIN 22 166 402 - -
Cla06g00088 402 CDD Bbox1_BBX-like 170 212 - -
Cla06g00088 402 Pfam B-box zinc finger 218 260 IPR000315 GO:0008270
Cla06g00088 402 CDD Bbox1_BBX-like 221 263 - -
Cla06g00088 402 Gene3D Classic Zinc Finger 165 263 - -
Cla06g00088 402 ProSiteProfiles Zinc finger B-box type profile. 165 212 IPR000315 GO:0008270
Cla06g00088 402 SMART bboxneu5 217 264 IPR000315 GO:0008270
Cla06g00088 402 SMART bboxneu5 165 212 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00088 - - - csv:101215327 460.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00088 Cla-Chr6:893819 Cla07g00964 Cla-Chr7:25824123 1.45E-08 dispersed
Cla06g00088 Cla-Chr6:893819 Cla08g01445 Cla-Chr8:27322483 2.27E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1241 Blo01g00195 . Bda03g00975 . Bpe04g00902 . . . Cmo08g00198 Cmo17g00588 . . . . . . . . . . . . . . Cla06g00088 Cam06g0132 . . Clacu06g0097 Cmu06g0095 Cre06g0866 . . Cone18ag0848 . . . . . . Blo07g00112 . . Bpe05g00975 . . Bma06g01437 . . . . Cma17g00607 Car08g00177 Car17g00573 . Cpe17g01088 . . . . . . . . . . . . . . . . . Cme11g02456
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g01788 . 107 484 Orphan Transcription Factor Family AT5G61850 70.6 3.6e-123 438.7
Cla06g00088 . 166 332 Orphan Transcription Factor Family AT1G06040 67.8 1.8e-60 229.2
Cla07g00964 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.1e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61215 PF00643 zf-B_box 1.40E-07 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00088 Cla_Chr06 FPKM 11.624649 12.462034 10.512638 11.187257 8.816308 10.710477 10.562561 7.874131 8.282166 8.992655