Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00088 ATGGGCAAATGCGAAGATTCAGATTCTTCTGTCAATGGTGAAGAACTTGATGAAATGAGCAAAGTTAGGGTTTCTGAATCAGATGGGGATTTTCTTACTTGGGAGCTCCCACATCCACAAACCAATCGAGCTTCACAGCCACACAAATGGCGTCCACTCTTTTCCGCCTTGTTGTCTCCACCATCTTTCTTGATTTTGATTTCCCTAAATCTCAACCCTTATCATCTCACCCTTCTCGACCCTCCTCAATCCTCCGCCATTTACTCCTCTTTCTCTATCCCCTTCTTTCTCCGTTTTTATTCTCAAACACCCACTTTCCCTTCTTCTTCTCTTCCATTTTCTCTTCCATCTCTCCGGCGGTTGTGTTCTAGCGGCGTTAGGAGTTACTGTTTTTCATCAGAAGTTCATGGGTTCGTTGATCTTCGAGTAGGAAAGGGGGGAAGAGGGGTTTCCGGGAATTTATTGAAAATTGGTGTGGTAGTCCAGAAGGAGAAGATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTCTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCTAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGTACGAAGGATGTTGACAAGGCCAAGATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCCAACTTCACATCCTCATGGGCGGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACGTCACACTCAGGTAGTGCACTTGCATGCAGACCGACGAAGTCGAGCATATCATACAAAAAGCCTAGGATCGAGATGGTTGATGACGAGGAGTTTTTTACGGTTCCTGATCTTGGATGA 1209 45.57 MGKCEDSDSSVNGEELDEMSKVRVSESDGDFLTWELPHPQTNRASQPHKWRPLFSALLSPPSFLILISLNLNPYHLTLLDPPQSSAIYSSFSIPFFLRFYSQTPTFPSSSLPFSLPSLRRLCSSGVRSYCFSSEVHGFVDLRVGKGGRGVSGNLLKIGVVVQKEKMKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKAKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGSALACRPTKSSISYKKPRIEMVDDEEFFTVPDLG 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 893819 899716 - ClCG06G000940.1 Cla06g00088 274280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00088 402 ProSiteProfiles Zinc finger B-box type profile. 217 264 IPR000315 GO:0008270
Cla06g00088 402 MobiDBLite consensus disorder prediction 279 300 - -
Cla06g00088 402 MobiDBLite consensus disorder prediction 1 21 - -
Cla06g00088 402 PANTHER B-BOX ZINC FINGER PROTEIN 24 166 402 - -
Cla06g00088 402 PANTHER B-BOX ZINC FINGER PROTEIN 22 166 402 - -
Cla06g00088 402 CDD Bbox1_BBX-like 170 212 - -
Cla06g00088 402 Pfam B-box zinc finger 218 260 IPR000315 GO:0008270
Cla06g00088 402 CDD Bbox1_BBX-like 221 263 - -
Cla06g00088 402 Gene3D Classic Zinc Finger 165 263 - -
Cla06g00088 402 ProSiteProfiles Zinc finger B-box type profile. 165 212 IPR000315 GO:0008270
Cla06g00088 402 SMART bboxneu5 217 264 IPR000315 GO:0008270
Cla06g00088 402 SMART bboxneu5 165 212 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00088 Cla-Chr6:893819 Cla07g00964 Cla-Chr7:25824123 1.45E-08 dispersed
Cla06g00088 Cla-Chr6:893819 Cla08g01445 Cla-Chr8:27322483 2.27E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61215 PF00643 zf-B_box 1.40E-07 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00088 - - csv:101215327 460.685