Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla06g00088 | ATGGGCAAATGCGAAGATTCAGATTCTTCTGTCAATGGTGAAGAACTTGATGAAATGAGCAAAGTTAGGGTTTCTGAATCAGATGGGGATTTTCTTACTTGGGAGCTCCCACATCCACAAACCAATCGAGCTTCACAGCCACACAAATGGCGTCCACTCTTTTCCGCCTTGTTGTCTCCACCATCTTTCTTGATTTTGATTTCCCTAAATCTCAACCCTTATCATCTCACCCTTCTCGACCCTCCTCAATCCTCCGCCATTTACTCCTCTTTCTCTATCCCCTTCTTTCTCCGTTTTTATTCTCAAACACCCACTTTCCCTTCTTCTTCTCTTCCATTTTCTCTTCCATCTCTCCGGCGGTTGTGTTCTAGCGGCGTTAGGAGTTACTGTTTTTCATCAGAAGTTCATGGGTTCGTTGATCTTCGAGTAGGAAAGGGGGGAAGAGGGGTTTCCGGGAATTTATTGAAAATTGGTGTGGTAGTCCAGAAGGAGAAGATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTCTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCTAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGTACGAAGGATGTTGACAAGGCCAAGATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCCAACTTCACATCCTCATGGGCGGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACGTCACACTCAGGTAGTGCACTTGCATGCAGACCGACGAAGTCGAGCATATCATACAAAAAGCCTAGGATCGAGATGGTTGATGACGAGGAGTTTTTTACGGTTCCTGATCTTGGATGA | 1209 | 45.57 | MGKCEDSDSSVNGEELDEMSKVRVSESDGDFLTWELPHPQTNRASQPHKWRPLFSALLSPPSFLILISLNLNPYHLTLLDPPQSSAIYSSFSIPFFLRFYSQTPTFPSSSLPFSLPSLRRLCSSGVRSYCFSSEVHGFVDLRVGKGGRGVSGNLLKIGVVVQKEKMKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKAKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGSALACRPTKSSISYKKPRIEMVDDEEFFTVPDLG | 402 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 893819 | 899716 | - | ClCG06G000940.1 | Cla06g00088 | 274280 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla06g00088 | 402 | ProSiteProfiles | Zinc finger B-box type profile. | 217 | 264 | IPR000315 | GO:0008270 | |
Cla06g00088 | 402 | MobiDBLite | consensus disorder prediction | 279 | 300 | - | - | |
Cla06g00088 | 402 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cla06g00088 | 402 | PANTHER | B-BOX ZINC FINGER PROTEIN 24 | 166 | 402 | - | - | |
Cla06g00088 | 402 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 166 | 402 | - | - | |
Cla06g00088 | 402 | CDD | Bbox1_BBX-like | 170 | 212 | - | - | |
Cla06g00088 | 402 | Pfam | B-box zinc finger | 218 | 260 | IPR000315 | GO:0008270 | |
Cla06g00088 | 402 | CDD | Bbox1_BBX-like | 221 | 263 | - | - | |
Cla06g00088 | 402 | Gene3D | Classic Zinc Finger | 165 | 263 | - | - | |
Cla06g00088 | 402 | ProSiteProfiles | Zinc finger B-box type profile. | 165 | 212 | IPR000315 | GO:0008270 | |
Cla06g00088 | 402 | SMART | bboxneu5 | 217 | 264 | IPR000315 | GO:0008270 | |
Cla06g00088 | 402 | SMART | bboxneu5 | 165 | 212 | IPR000315 | GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla06g00088 | Cla-Chr6:893819 | Cla07g00964 | Cla-Chr7:25824123 | 1.45E-08 | dispersed | |
Cla06g00088 | Cla-Chr6:893819 | Cla08g01445 | Cla-Chr8:27322483 | 2.27E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61215 | PF00643 | zf-B_box | 1.40E-07 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla06g00088 | - | - | csv:101215327 | 460.685 |