Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00090 ATGGCGAATCTCGTTCCTGGAGTGCTTCTCAAACTACTGCAGCACATGAACACAGATGTGAAGGTTGCTGGAGAGCACAGGTCGACGTTGTTACAAGTTGTGAGCATAGTTCCGGCACTGGCCGGCGGCGATCTCTCACCGAATCAAGGTTTTTATCTCAAAGTCTCTGATTCTTCTCATGCCACATATGTCTCACTCCCTGATGAACATGGTGATCTGATTCTTAGTGACAAGATTCAATTGGGTCAGTTTATTCATGTCGAACGGCTTGAGGCTGCTTCACCAGTCCCCATTCTTCACGGAGTTCGACCGGTGCCCGGTCGACACCCTTGTGTGGGGAGCCCTGAAGATATTGTTGCTACTCATTCTCCTGGGTTTCTTAACAATAATCCTAATTTGAAACCTTTGGACAAATTGAAACCGACCCCAAAAGTTTTAGGCCTCAGCATTGGTGGGGAGAAGGAGAAATCTGCGCCTGTGAGACTCAATGGCAATGCCAAGGAGGATAAGATTGACAAGAGAGCCTCACCCTTGAGCAGATCCAAGTCTCAGGCGTCAAAATTGACAGTGAATGTAGATGTGAAGAAGGAGCCTCTGACGAGACTAAAGTCGATGAATTCACGGTCGATACCCTCATCTCCAACAAGCTGTTATTCATTGCCTTCTTCATTTGAGAAGTTTGCCAACAGCATTAAGCAGCAGGGGAAGGTTAAGGCGTTGGCTAATGGAGCGATAGGAGCAGTTGAAAAGTCGAATCCTGTTCGTTCAGCCAGTCCTGTCCCCAAGAAAATGGGAGTGGGACATCAGATCAAACATTTAGTTCAGGGCATTGAGGTTGGGGCCAAGGCTCTGAGGAAGAGCTGGGAAGGGAATATGGAGACCAAAAGAAGAGACAATTCGATATTAAGAGCAAGCAAACTTGATCTCAAGCCTGAAGCTCGGGTTACTACTCCTAGAAGAAGTACATCAAGTGAAAAGTTGCCATCAAGAGAGGAGAATAGGATTCAGGTGCCTGCAAAGTCATCTAAAGATGATCATAGCTTGCACGCATCTTCAAAGAAGAATGCCGCTAGTGGAGCTTTAGATAATCAGGAAAGGTCAAATAGACAAAAATCTTCTAGTGGAAGGAAATCCTCCTCAAGTGATGCAGCCGGATTCCCCGGAAACTTGGTGAAGATTCCTCTTAGTCATAAAAGATTGAGTGAAGGGAGTATTTCATGGGCTTCACTTCCATCCTCTCTTGCCAAGCTTGGAAAGGTTTGCACAAGGGCGTGTCTGAAATTTAGAGCTCTTCTATATCCAATGACACCCCTAGTAGAGGGATACGGTAATAGTATAAGCAATGAAGTAATGAGGCATAGAGATGCTGCACAAGCAGCAGCTATAGAGGCTATTCAAGAAGCTTCGGTGGCAGAGAGCTGTCTACGATGTTTGAGTATATTTTCTGAGTTAAACACTGCTGCAAAAGAGGACAATCCACAGCCTGCGGTAGAACAGTTTTTGACCCTTCATGCGAGCCTAACCAATGCTCACATGGTAGCTGAATCTCTTTCGAAAACTAGTCTCTCTGGTTCAACCAATGAGAGCGAAGAAACCGCTTCAGAAGAAACAATGAAGGTCACATTAATGGCGAGAAAACAGGCTTCTGCTTGGGTTCAGGCTGCTTTAGCCACTAACCTTTCATCTTTTGCAGTTTACAGTCGTGATCCATCCTTGGCTCTAAACCCGACCCCGACTTTATCTCTATCTCAAAACCAAAAGAGTGCATCTGCAAATCAGCCGATAGTAGTTTTAGAAAACGCATCTAAGAACAGCTCGTCAAAATCCCAAGGGAAGGTCCGCCAGACGATAAGCTCTAAACCTATTGGATCAGGAAATCAAAGTCGAACAAAGGAAGGAGTGACACTCGGTCAGAAGGTGCAGCCTCAACCTCCACCAGAATGGGTCAGAGGAAACGGTCTCGACGAAGCAGTTGACTTAGCCGAGATGTTACGGCTGCAATCCCAGGACTGGTTCTTGACATTCATGGAAAGGTTCTTGGATGCAGGTGTGGACACTGCAGCTTTGTCAGATAATGGACAATTAGCAGGAATATTGACTCAGCTGAAGAGTGTAAACGACTGGTTAGATGGCATAGCTTCTACCAAGGACGAAGGAGACACCACCCACATTTCGACTGAGACAATCGACAGGCTGAGGAAGAAGATTTACGAGTATCTTCTCATGCACGTCGAGTCTGCAGCTGCTGCACTCGGGGGGGGATCGCAGCCACTGCCACAGCAGATACAAGCAACCGAAACAAAAGCAAGAAGCTTCTGCATCGGTTCACGTCATACTGTCATAGACGAAAAGTGGCCATTACTGGGAGGGAGATATGTAATGTTAGTTCAAACTTTTAGGGAGCCCAAAGGTGAATTTAGTATCTGTTTCTTCGTTTCTATTCCAATGCCGCTTCCTCCCAAACTGAGCCGACAACTGCACAGGGACTCGGACGTTACAGAGATGCCTTCCAACAGCTTGTGGGTTGGCAACTTATCCACGGATGTCACCGATGCGGATCTCATGAATTTGTTTGCGCAGTTTGGTGCGCTTGATAGTGTTACTTCCTATTCCTCTAGGAGCTACGCTTTCATCTTCTTCAAGCACATGGAGGATGCCCAAGCTGCCAAAGAGGCTCTTCAGGGTTTTTTTCTGCGTGGGAATTCTATCAAAATCGAGTTTGCTAGACCGGCCAAACCTTGTAGGAATTTGTGGGTGGGTGGTATTAGCCCAGCTGTTTCAAGGGAACAACTTGAAGAAGAATTTTCCAAATTTGGTAAAATTGATGACTTTAAGTTTTTGCGAGATCGGAATACGGCATTTGTTGAGTATGTTCGATTGGAAGATGCATCACAAGCTTTGAGAATGATGAATGGGAAACGCATTGGTGGAGACCAGATTCGAGTTGATTTTCTTCGGTCACAGCCAGTGAGAAGAGATCAGTGGCCAGACACCAGAGATGGGCATGGTCAGCTTCAGGGTAGAAATGTGGGGATGGGCGATTTCCAATCGGGTTATAAAAGACCACTGCATGCTCAATCTTCTGAAATGCGTAGAGATGGACCTCCCAGTAAGGTTTTGTGGATTGGTTATCCTCCATCTGTTCAAATTGATGAACAAATGCTCCACAATGCGATGATTTTATTTGGTGAGATAGAGAGAATTACGAGTTTCCATTCTAGGCATTTTGCATTTGTAGAATTTAGAAGTGTTGATGAAGCACGGCGTGCTAAGGAGGGTCTACAAGGACGGCTTTTTAATGATCCTCGGATTACTATTATGTTTTCAAACAGTGATCCGGGACCTGTAAAAGAGCACCCTGGCTTTTATCCTGGTGGTAAAGAGGCTAGGCCTGATATGTTCTTCAATGAGCATCAAATCCGTCCTCCACAAATGGACCTGTTGGGACATCCTCATCCATTGGTGCAAAATAAGTTTCCTGGACCACTGCCATCTAGTGGCATTCTTGGACCAAATACAGCAGTAAGACCGCCACCCTTTGGTCCTCCACAGGGTATCTCAGGGCCCCCTGAGTTTAATGACTTGGCCACGTCTCATAGTTTCCAGGATGCAAATTCAAAAAATATGATGGGTCCAAATTGGAGAAGGCAATCTCCTCCTGCACCTGGGATACTTTCTTCTCCAGCTACTGGTATTCGTCCACCTCCACCAGTGAGGTCCACTCCAAATTCATGGGATGTTTTGGATGTAAATCAATTCCAAAGGGATTCTAAACGATCAAGGATAGATGGTCCGGCATCCTTAGACGATGCTTCTTTTCCTCCAAGAAAACTGGATAACCGGGGCATGGGTTTTGATCAGCAATATGGGGTTGGTCCAATAAGTGATGGAGGTTCTTCTGTTCCATATGCCAATGCTCCAGCTAAGGCTCCTGCTATTCCTATAGGTGCAAGGGCCCCAGTTAGTGGTCCTGGCCAGAGCCATGCTGAAAATGATTTTATATGGCGGGGAATAATTGCCAAGGGAGGAACACCTGTTTGTCATGCTCGTTGTGTCCCAATTGGTGAAGGAATAGGAAGTGAGCTTCCGGAAGTAGTCAATTGTTCAGCAAGAACTGGGCTGGATCAGCTCACTAAACATTATGCTGAAGCCACAGGATTTGACATTGTATTTTTCTTGCCAGATAGTGAGGATGATTTTGCATCGTATACTGAATTCCTGCGTTATCTAGGTGCAAAAAACCGTGCAGGTGTTGCTAAGTTTGATGATGGAACTACAATGTTTTTGGTTCCTCCTTCAGAGTTTTTGAGAAAAGTCTTGAAAGTTTCTGGTCCTGAACGGCTTTATGGTCTCGTTCTCAAATTTCCTCAGGTGTCTATTAGTGAACCTGCTCCCCAACAGTCATATCTACCCATTCCTACATCTGACTATGGTGAGAGACAACATGTTTTGCCTTCACAAACTGAATATGGATCAGTGCCTTCAAAGCAGGAGCAACTTCCTCCAATGGATTATAGTAGGGTTTTGCATGACGAAACCAAGGAGCCCCCAAAACCGCTTCTGCCCACAAGTGAGCCACCACCACTAGCAGTTCAGCCCTTGCCTCAAGAGTATTCTGGTAACAATAATACAGCTGCAATCTCGCAAGCTGGGTTAGCATTAACACCCGAGCTTATTGCCACATTGGTTTCTTTACTGCCTGGCAAGACACAGTCATCCAGCTTAGAGAGTGCCAAACAACCAGCAGTCTCACCACAACCTCCAATTCCTCCTGTTGTTTCTAATAAAGGGGCTACATCTGAGGGATGGATGGTAGGTCATCAATCTTCTGATCTAACCGGTCAGCCATTTCAACAAATGGGGAATCATTTTAATCCTCAGGGACAGAGCCTTTCTCAATTTCAGCCTTATCCACCCCTCCACCAGACACCTAACCAGCTTGCACCGCAAGCCATTGGAACAAGCCAAATCCAAGATGCTGCTGTCAGTCTGCCACAGCAGCAGCAGGTACCCATTCCTTACAGGCCTTTGTCTACTTATTCTGCCCCTCCTGAAAATGCACAAGCTTCTGGTTTGGCCTTGGTCAATTCTCAGTATCAGCATGATGTCTCGCAAATTAGCCAGAGAGGTTATGGGTCAGTCAATGGAGTTGATACTTCTGGGTATGGTCCACCAGTTATGCAGCAATCAACAAATACTGTGACCTTATCTAATCAAGGTCAGGGTTCTACTACACAGTCACAACCTATTACTCAATTAGCATCAGATAGGGTGAACCCCCCTGAGCTTCCTTATCAGATGCAGCATTTGCAATCTGCGAACCTCGGCACTGGCAGTGGGACCAGTGATGTTGAGGCAGGCAAAGACCAGAGATATCGATCTACACTCCAATTTGCTGCCAATTTACTCCTCCAGATTCAGCAGCAGCAGCAGCAGCAGCAACAGCAAGCAGGCTGGGGTTCAGGAAATCAATAG 5475 46.05 MANLVPGVLLKLLQHMNTDVKVAGEHRSTLLQVVSIVPALAGGDLSPNQGFYLKVSDSSHATYVSLPDEHGDLILSDKIQLGQFIHVERLEAASPVPILHGVRPVPGRHPCVGSPEDIVATHSPGFLNNNPNLKPLDKLKPTPKVLGLSIGGEKEKSAPVRLNGNAKEDKIDKRASPLSRSKSQASKLTVNVDVKKEPLTRLKSMNSRSIPSSPTSCYSLPSSFEKFANSIKQQGKVKALANGAIGAVEKSNPVRSASPVPKKMGVGHQIKHLVQGIEVGAKALRKSWEGNMETKRRDNSILRASKLDLKPEARVTTPRRSTSSEKLPSREENRIQVPAKSSKDDHSLHASSKKNAASGALDNQERSNRQKSSSGRKSSSSDAAGFPGNLVKIPLSHKRLSEGSISWASLPSSLAKLGKVCTRACLKFRALLYPMTPLVEGYGNSISNEVMRHRDAAQAAAIEAIQEASVAESCLRCLSIFSELNTAAKEDNPQPAVEQFLTLHASLTNAHMVAESLSKTSLSGSTNESEETASEETMKVTLMARKQASAWVQAALATNLSSFAVYSRDPSLALNPTPTLSLSQNQKSASANQPIVVLENASKNSSSKSQGKVRQTISSKPIGSGNQSRTKEGVTLGQKVQPQPPPEWVRGNGLDEAVDLAEMLRLQSQDWFLTFMERFLDAGVDTAALSDNGQLAGILTQLKSVNDWLDGIASTKDEGDTTHISTETIDRLRKKIYEYLLMHVESAAAALGGGSQPLPQQIQATETKARSFCIGSRHTVIDEKWPLLGGRYVMLVQTFREPKGEFSICFFVSIPMPLPPKLSRQLHRDSDVTEMPSNSLWVGNLSTDVTDADLMNLFAQFGALDSVTSYSSRSYAFIFFKHMEDAQAAKEALQGFFLRGNSIKIEFARPAKPCRNLWVGGISPAVSREQLEEEFSKFGKIDDFKFLRDRNTAFVEYVRLEDASQALRMMNGKRIGGDQIRVDFLRSQPVRRDQWPDTRDGHGQLQGRNVGMGDFQSGYKRPLHAQSSEMRRDGPPSKVLWIGYPPSVQIDEQMLHNAMILFGEIERITSFHSRHFAFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSNSDPGPVKEHPGFYPGGKEARPDMFFNEHQIRPPQMDLLGHPHPLVQNKFPGPLPSSGILGPNTAVRPPPFGPPQGISGPPEFNDLATSHSFQDANSKNMMGPNWRRQSPPAPGILSSPATGIRPPPPVRSTPNSWDVLDVNQFQRDSKRSRIDGPASLDDASFPPRKLDNRGMGFDQQYGVGPISDGGSSVPYANAPAKAPAIPIGARAPVSGPGQSHAENDFIWRGIIAKGGTPVCHARCVPIGEGIGSELPEVVNCSARTGLDQLTKHYAEATGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGTTMFLVPPSEFLRKVLKVSGPERLYGLVLKFPQVSISEPAPQQSYLPIPTSDYGERQHVLPSQTEYGSVPSKQEQLPPMDYSRVLHDETKEPPKPLLPTSEPPPLAVQPLPQEYSGNNNTAAISQAGLALTPELIATLVSLLPGKTQSSSLESAKQPAVSPQPPIPPVVSNKGATSEGWMVGHQSSDLTGQPFQQMGNHFNPQGQSLSQFQPYPPLHQTPNQLAPQAIGTSQIQDAAVSLPQQQQVPIPYRPLSTYSAPPENAQASGLALVNSQYQHDVSQISQRGYGSVNGVDTSGYGPPVMQQSTNTVTLSNQGQGSTTQSQPITQLASDRVNPPELPYQMQHLQSANLGTGSGTSDVEAGKDQRYRSTLQFAANLLLQIQQQQQQQQQQAGWGSGNQ 1824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 903927 925442 - ClCG06G000960.2 Cla06g00090 274282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00090 1824 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1038 1111 IPR000504 GO:0003723
Cla06g00090 1824 SUPERFAMILY RNA-binding domain, RBD 819 911 IPR035979 GO:0003676
Cla06g00090 1824 MobiDBLite consensus disorder prediction 290 388 - -
Cla06g00090 1824 MobiDBLite consensus disorder prediction 1256 1281 - -
Cla06g00090 1824 Pfam Plant protein of unknown function (DUF936) 4 422 IPR010341 -
Cla06g00090 1824 Pfam Plant protein of unknown function (DUF936) 447 751 IPR010341 -
Cla06g00090 1824 CDD RRM3_Spen 840 909 - -
Cla06g00090 1824 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 838 910 IPR000504 GO:0003723
Cla06g00090 1824 MobiDBLite consensus disorder prediction 1728 1750 - -
Cla06g00090 1824 MobiDBLite consensus disorder prediction 160 177 - -
Cla06g00090 1824 MobiDBLite consensus disorder prediction 1510 1541 - -
Cla06g00090 1824 MobiDBLite consensus disorder prediction 290 315 - -
Cla06g00090 1824 Gene3D - 912 1024 IPR012677 -
Cla06g00090 1824 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 840 904 IPR000504 GO:0003723
Cla06g00090 1824 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1050 1104 IPR000504 GO:0003723
Cla06g00090 1824 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 917 981 IPR000504 GO:0003723
Cla06g00090 1824 CDD RRM3_Spen 1040 1110 - -
Cla06g00090 1824 MobiDBLite consensus disorder prediction 1519 1533 - -
Cla06g00090 1824 MobiDBLite consensus disorder prediction 352 385 - -
Cla06g00090 1824 MobiDBLite consensus disorder prediction 1208 1244 - -
Cla06g00090 1824 MobiDBLite consensus disorder prediction 600 649 - -
Cla06g00090 1824 Gene3D - 1025 1115 IPR012677 -
Cla06g00090 1824 SUPERFAMILY RNA-binding domain, RBD 913 1109 IPR035979 GO:0003676
Cla06g00090 1824 MobiDBLite consensus disorder prediction 148 188 - -
Cla06g00090 1824 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 915 987 IPR000504 GO:0003723
Cla06g00090 1824 Gene3D - 822 911 IPR012677 -
Cla06g00090 1824 MobiDBLite consensus disorder prediction 518 537 - -
Cla06g00090 1824 MobiDBLite consensus disorder prediction 324 351 - -
Cla06g00090 1824 SMART rrm1_1 1039 1107 IPR000504 GO:0003723
Cla06g00090 1824 SMART rrm1_1 916 983 IPR000504 GO:0003723
Cla06g00090 1824 SMART rrm1_1 839 906 IPR000504 GO:0003723
Cla06g00090 1824 CDD RRM3_Spen 917 986 - -
Cla06g00090 1824 PANTHER RNA RECOGNITION MOTIF-CONTAINING 824 1824 - -
Cla06g00090 1824 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 824 1824 - -
Cla06g00090 1824 MobiDBLite consensus disorder prediction 992 1011 - -
Cla06g00090 1824 MobiDBLite consensus disorder prediction 600 637 - -
Cla06g00090 1824 Pfam SPOC domain 1327 1446 IPR012921 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00090 - - - csv:101214330 1850.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01036 Cla-Chr2:21039411 Cla06g00090 Cla-Chr6:903927 1.40E-06 dispersed
Cla06g00090 Cla-Chr6:903927 Cla08g00925 Cla-Chr8:21793594 8.17E-08 dispersed
Cla10g00457 Cla-Chr10:6037764 Cla06g00090 Cla-Chr6:903927 8.13E-11 dispersed
Cla06g00090 Cla-Chr6:903927 Cla10g01863 Cla-Chr10:34538337 4.34E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00090 Cla_Chr06 FPKM 24.783436 25.263077 18.681734 18.020615 27.233662 27.133282 27.469975 20.560345 20.246443 22.852522