Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00091 ATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAATTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTACAGATCTGGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAATTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTACAGATCTGGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAGTCTCAAATGATCACAAGAATGAGAACTAG 729 41.84 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDRGKPFGRLAFPPSLGNFYLTLETNFRHLGVYRSGFECARSVKEWVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDRGKPFGRLAFPPSLGNFYLTLETNFRHLGVYRSGFECARSVKEWLVSNDHKNEN 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 936358 946787 - ClCG06G000980.2 Cla06g00091 274283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00091 242 Pfam Ribosomal L38e protein family 127 188 IPR002675 GO:0003735|GO:0005840|GO:0006412
Cla06g00091 242 Pfam Ribosomal L38e protein family 2 63 IPR002675 GO:0003735|GO:0005840|GO:0006412
Cla06g00091 242 Gene3D - 1 66 IPR038464 -
Cla06g00091 242 Gene3D - 126 191 IPR038464 -
Cla06g00091 242 PANTHER BNACNNG77070D PROTEIN 1 63 - -
Cla06g00091 242 PANTHER BNACNNG77070D PROTEIN 120 188 - -
Cla06g00091 242 PANTHER 60S RIBOSOMAL PROTEIN L38 1 63 IPR002675 GO:0003735|GO:0005840|GO:0006412
Cla06g00091 242 PANTHER 60S RIBOSOMAL PROTEIN L38 120 188 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00091 K02923 RP-L38e, RPL38; large subunit ribosomal protein L38e - pda:103710002 128.642
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1279 . . . . . . . . Cmo08g00196 . . . . . . . . . . . . . . . Cla06g00091 Cam06g0127 Cec06g0103 Cco06g0098 Clacu06g0102 Cmu06g0099 Cre06g0870 . . . . . . . . . . . . . . . . Sed09g0403 . . . . . . . Cpe17g01085 Bhi12g02498 Tan06g1556 Cmetu11g0956 . . . . . . . . . . . . . . Cme11g02452
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001020 4 4 4 5 4 1 0 2 2 3 1 1 4 2 3 2 1 4 3 1 2 2 4 2 5 2 2 4 3 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00091 Cla_Chr06 FPKM 22.150503 21.068787 24.239513 22.607925 22.886793 27.922209 26.016075 29.591681 30.860441 29.28417