Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00100 ATGGTGTCCGCCACCGCCACCGCAACTGCAACGGTAACCGACATTGCTTCAGAATTCCGGCGGCCAATATTCACCAAAGTTCCTGTTAAGGGCTATTGCCGCAATGCCCTGGTTTGTCTAAACTTTGGAGGTGTTGAATTTGATAATGTACAAGATGGGTTGTGTAGGAGGTCGTCATTTTCTTATAGTCCCCATAAAATGGGTTCCAGATTTTTGTCCAAACCGACGTCCGTAGCTAGTTCAGGTTTCGAGGCAGCCATCACAGATTACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGATGAAAACCAGATACAACTAAGAGTGGACTTGACTGGGGATGAGACACAAAAGGTATTTGATCAAGTTTTGGCAAACTTAGCCCGTTCAGCACCACCAATGCCAGGATTTCGTAGGCAAAAAGGAGGGAAAACATCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGACCGAGTCACGAAGTTTGTCATACAAGAAATATTGAACTCAACTATGGCAGATTATGCAAAGAAGGAAAACATAAATGTAAAGGACAAGAAGGTTAACACAACACAAACAGCAGATGAACTGAAAGTATTGTTTAGTCCAGGAAAAGATTTTGGTTTCAATGCCATACTTGAACTTGAATCTGGTTCAGATGGTGAAAATTGA 702 41.6 MVSATATATATVTDIASEFRRPIFTKVPVKGYCRNALVCLNFGGVEFDNVQDGLCRRSSFSYSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1048613 1052547 + ClCG06G001080.2 Cla06g00100 274292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00100 233 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 12 229 IPR005215 GO:0015031
Cla06g00100 233 SUPERFAMILY Trigger factor ribosome-binding domain 101 225 IPR036611 GO:0006457|GO:0015031
Cla06g00100 233 Pfam Bacterial trigger factor protein (TF) 101 225 IPR008881 GO:0006457|GO:0015031
Cla06g00100 233 PANTHER OS01G0894700 PROTEIN 12 229 - -
Cla06g00100 233 Gene3D - 101 226 IPR036611 GO:0006457|GO:0015031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00100 - - - csv:101212225 415.616
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00099 Cla-Chr6:1037705 Cla06g00100 Cla-Chr6:1048613 7.48E-27 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1315 . . Bda03g00967 . . . . . Cmo08g00193 . . . . . . . . . . . . . . . Cla06g00100 Cam06g0115 Cec06g0112 Cco06g0111 Clacu06g0113 Cmu06g0111 Cre06g0881 Cone14ag0623 Cone15ag0631 . . . . . . . . . . . . . . Sed07g0072 . . . . Car08g00172 . . . Bhi12g02475 Tan06g1535 Cmetu11g0607 . . . . . . . . . . . . . . Cme11g02438
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011773 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00100 Cla_Chr06 FPKM 6.611111 9.190429 10.119064 7.501081 9.6132 7.454095 10.856495 7.689761 3.940608 10.132237