Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g00118 | ATGGAGTTGGATGGCATCGAAGGTATGCCATCCATGGATGTGATGGATGAGGAAGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCAACAATAACGACAATCCCACCACCACAAGTGTCCACGAGCTTCTTGAATGTCCCGTTTGCACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGACATACACTCTGTTCTTCATGTAAAACAAGGGTAGACAACCGTTGCCCAGCGTGCAGACAAGAGCTCGGTGATATCAGATGTCTCGCATTAGAAAAAATAGCTGAATCACTTAAACTGGCTTGTAAATTTTGCACATTTGGGTGCCAGGAGATCTTGCCTTACTACAGCAAACTCAAACACGAATCTGCTTGTTACTATAGACCATATACCTGTCCTTATGCTGGATCAGACTGCCCAATTGATGGGGATATTCCTTTCCTTGTTTCTCATCTTCGGGACGATCACAAGGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTTGAAAACGCTACATGGATGCTAACAGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCAGTTTACATGGCATTTCTCCGATTCATGGGGGACGAAACAGATGCCCGAAACTACAGTTACAGCCTCGAGGTCGGTGGAAATGGCAGGAAGCTGATATGGGAGGGAAACCCTCGAAGCATTCGGGACAACCACAAAAAAGTCAGAGACAGCCACGATGGCCTCATTATACAACGAAACATGGCACTCTTCTTCTCGGGAGGGGAAAGGAAAGAGCTGAAGCTGCGGATCACGGGACGGATTTGGAAAGAACAAAATAAACAGTAA | 915 | 45.57 | MELDGIEGMPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPACRQELGDIRCLALEKIAESLKLACKFCTFGCQEILPYYSKLKHESACYYRPYTCPYAGSDCPIDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ | 304 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1278185 | 1281524 | + | ClCG06G001270.1 | Cla06g00118 | 274310 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g00118 | 304 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 9 | 302 | - | - | |
| Cla06g00118 | 304 | SUPERFAMILY | TRAF domain-like | 106 | 298 | - | - | |
| Cla06g00118 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 160 | IPR013083 | - | |
| Cla06g00118 | 304 | CDD | Sina | 167 | 295 | - | - | |
| Cla06g00118 | 304 | CDD | RING-HC_SIAHs | 51 | 89 | - | - | |
| Cla06g00118 | 304 | Pfam | Seven in absentia protein family | 95 | 294 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
| Cla06g00118 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 105 | IPR013083 | - | |
| Cla06g00118 | 304 | ProSiteProfiles | Zinc finger SIAH-type profile. | 106 | 166 | IPR013010 | GO:0008270 | |
| Cla06g00118 | 304 | PANTHER | UBIQUITIN LIGASE SINAT3 | 9 | 302 | - | - | |
| Cla06g00118 | 304 | SUPERFAMILY | RING/U-box | 47 | 93 | - | - | |
| Cla06g00118 | 304 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 161 | 294 | IPR008974 | GO:0005515 | |
| Cla06g00118 | 304 | ProSiteProfiles | Zinc finger RING-type profile. | 53 | 89 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g00969 | Cla-Chr5:9781419 | Cla06g00118 | Cla-Chr6:1278185 | 9.39E-178 | dispersed | |
| Cla05g02675 | Cla-Chr5:37929342 | Cla06g00118 | Cla-Chr6:1278185 | 3.95E-124 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g00118 | K04506 | - | csv:101209363 | 647.891 |