Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00118 ATGGAGTTGGATGGCATCGAAGGTATGCCATCCATGGATGTGATGGATGAGGAAGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCAACAATAACGACAATCCCACCACCACAAGTGTCCACGAGCTTCTTGAATGTCCCGTTTGCACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGACATACACTCTGTTCTTCATGTAAAACAAGGGTAGACAACCGTTGCCCAGCGTGCAGACAAGAGCTCGGTGATATCAGATGTCTCGCATTAGAAAAAATAGCTGAATCACTTAAACTGGCTTGTAAATTTTGCACATTTGGGTGCCAGGAGATCTTGCCTTACTACAGCAAACTCAAACACGAATCTGCTTGTTACTATAGACCATATACCTGTCCTTATGCTGGATCAGACTGCCCAATTGATGGGGATATTCCTTTCCTTGTTTCTCATCTTCGGGACGATCACAAGGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTTGAAAACGCTACATGGATGCTAACAGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCAGTTTACATGGCATTTCTCCGATTCATGGGGGACGAAACAGATGCCCGAAACTACAGTTACAGCCTCGAGGTCGGTGGAAATGGCAGGAAGCTGATATGGGAGGGAAACCCTCGAAGCATTCGGGACAACCACAAAAAAGTCAGAGACAGCCACGATGGCCTCATTATACAACGAAACATGGCACTCTTCTTCTCGGGAGGGGAAAGGAAAGAGCTGAAGCTGCGGATCACGGGACGGATTTGGAAAGAACAAAATAAACAGTAA 915 45.57 MELDGIEGMPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPACRQELGDIRCLALEKIAESLKLACKFCTFGCQEILPYYSKLKHESACYYRPYTCPYAGSDCPIDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 304
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 1278185 1281524 + ClCG06G001270.1 Cla06g00118 274310
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00118 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 9 302 - -
Cla06g00118 304 SUPERFAMILY TRAF domain-like 106 298 - -
Cla06g00118 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 160 IPR013083 -
Cla06g00118 304 CDD Sina 167 295 - -
Cla06g00118 304 CDD RING-HC_SIAHs 51 89 - -
Cla06g00118 304 Pfam Seven in absentia protein family 95 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cla06g00118 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 105 IPR013083 -
Cla06g00118 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270
Cla06g00118 304 PANTHER UBIQUITIN LIGASE SINAT3 9 302 - -
Cla06g00118 304 SUPERFAMILY RING/U-box 47 93 - -
Cla06g00118 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 294 IPR008974 GO:0005515
Cla06g00118 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00969 Cla-Chr5:9781419 Cla06g00118 Cla-Chr6:1278185 9.39E-178 dispersed
Cla05g02675 Cla-Chr5:37929342 Cla06g00118 Cla-Chr6:1278185 3.95E-124 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00118 K04506 - csv:101209363 647.891