Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00123 ATGGCTTCTACTACTGGTCTTGTAGTTGGTTCTCTTGTTTGGTTGGAGGACTCTGAAGAAGCTTGGATAGAGGGCGAAGTTCTAGAACTTCATGGTGAAGAAATTAAGGTCCTATGCACCTCAGGGAAAACGGTTGTAGTCAAAGCAGCTAATGTCTATCCCAAAGATTCTGAAGTGCCACCCTGTGGGGTGGATGACATGACCAAGTTGGCTTACTTGCACGAACCAGGGGTGCTACACAATTTAAAATTGAGATATGATATCAATGAAATATATACTTATACAGGGAACATATTAATTGCCGTGAACCCTTTTACAAAGTTGCCGCATCTCTATGATAGCTATATGATGGCACAATATAAAGGGGCTGCATTTGGTGAGCTGAGTCCACATCCATTTGCAGTTGCAGATTCTGCCTACAGGCATTTTTCCACAATACTTTTACTTATGGTCAATGAGAAAAAAAGTCAATCCATATTGGTCAGTGGTGAAAGTGGGGCTGGAAAGACGGAAAGTACGAAGTTGCTTATGCGTTATCTTGCATATATGGGAGGGAGAGCTGCTGCTGAGGGGAGGTCTGTTGAGCAGCAAGTTCTGGAGTCAAATCCTGTTTTAGAAGCATTTGGGAATGCAAAAACTGTTCGGAACAACAACTCAAGTCGTTTTGGTAAGTTTGTGGAGATCCAATTTGACCAACGGGGAAGAATATCAGGAGCTGCTATCAGAACTTACTTGCTGGAAAGATCTCGTGTTTGTCAGGTGTCCGATCCCGAGAGAAACTATCATTGCTTCTACATGCTTTGTGCTGCACCACCTGAGGAGGTCAAGAAGTATAAATTGGGAAACCCAAGAGATTTCCATTATCTAAATCAATCAAACTGCCACGCTTTGGATGGAATTGATGATGCCAAGGAATATATTGCAACAAGAAAAGCAATGGAAGTTGTTGGGATAAGTTCGGAGGAGCAGGATGGAATATTTCGTGTTGTGGCTGCAATTCTTCATCTTGGAAACATTGAATTTGCAAAGGGGAAGGAGGCTGATTCTTCTGTTCCCAAAGATGAAAAATCTTGGTTCCATCTTAGAACTGCTGCGGAGCTTTTCATGTGTGATGAAAAGGCCTTGGAAGATTCTCTCTGCAAACGTGTGATTGTCACTCGTGATGAAACAATCACAAAGTGGCTGGATCCAAATTCTGCAGCCCTTAGCAGAGATGCTTTGGCAAAAATTGTATACTCAAGGTTATTTGACTGGCTGGTGGACAAAATTAATAATTCAATTGGGCAGGATCCTGATTCGAAATTCTTGATTGGAGTACTCGATATCTATGGATTTGAGAGTTTCAAGACAAACAGATGCCCTGGCATTTGGAGATTCCTAGGCATGCTCTTATGGAGGGCATCTAAGAGTTTTGGATGTCCTCCTGAAACATGGGTTTTCCAGATTCTCGAGTTGAGGGCATACCCATTTTTTGAACAATTTTGCATCAACTTGACTAATGAAAAGCTTCAGCAGCATTTCAATCAGCATGTTTTCAAGATGGAGCAAGAAGAGTATACAAAAGAGGAAATTGATTGGAGCTATATTGATTTTGTTGATAATCAGGATGTCCTTGATCTCATTGAAAAGAAACCTGGTGGTATTATTGCCCTTCTGGATGAAGCATGTATGTTCCCCAGATCAACTCATGAAACATTTGCTCAAAAGTTGTATCAGACATTCAAAAATCATAAACGCTTCAGCAAACCAAAATTAGCCCGGAGTGACTTCACAATTGCTCATTATGCTGGTGATGTCACCTATCAGACTGATTTATTTCTCGACAAAAATAAAGATTATGTTGTTGCTGAACACCAAGCGCTCTTAAGTGCTTCCAAATGCTCCTTCGTGTCATGTTTGTTTCCTCCATTAGCAGAAGAATCTTCCAAATCTTCAAAGTTCTCATCAATAGGTTCTCGTTTCAAGCTTCAATTGGTATCCCTGCTGGAAACTCTAAGTGCTACTGAGCCCCATTACATTCGATGTGTAAAGCCCAATAATCTTCTAAAGCCTGCTATCTTTGAGAATAAGAATATATTACAACAACTACGATGCGGGGGAGTCATGGAGGCAATTAGGATAAGTTGTGCTGGTTTTCCAACGAGGAAAACTTTTGATGAATTTGTTGACCGATTTGGACTCCTTGCACCTGAAGTTTTGGATGGGAGGTATAATTGGTTCTTAGCTTTCTTCAGACTGCAGATGACTGCTTGCAAGAGGCTTCTGGAGAAGGTTGGACTTAAGGGATACCAGATTGGTAAGACGAAGGTGTTTCTTAGAGCCGGTCAGATGGCTGAACTTGATGCGCTCAGAACTGAGATCTTAGGGCGATCAGCAAGTATTATTCAGCGGAAAGTTCGTTCTTATCTGGCACGTAGAAGTTTTGTATTGCTTCGGAGGTCAGCTATATGTCTGCAGTCTGCATGCAGAGGTAATAAATTGTCATCAACAAACTTTTGTACCGGACAACTTGCTCGAGAAGTATTTGAGGGCTTGAGGAGAGAAGCTTCTTCCTTAATGATTCAAAGAAATTTGCGCATGCATATCTGCAGGAAAGCTTACAAAGAAAAGTACTCTTCAGCTGTTTCTATTCAAACTGGAATGCGTGGAATGGCTGCTCGAAATGAGCTACGCTTCAGAAGGCAATCTAAAGCAGCAATTATTATCCAGAGCTACTGTCGCAGATATTTGGCTCAGCTGCACTATAAGAAGTTAAAGAAAGTAGCAATCACAACTCAATCTGCATGGAGAGGAAGAGTTGCTCGTAAGGAACTACGGAAGCTGAAGATGGCTGCAAAGGAAACAGGAGCTCTTCAAGCTGCGAAAAATAAATTGGAAAAGCAAGTCGAGGAATTAACATGGAGACTGCAGTTGGAGAAGCGCATGAGGGCTGACTTGGAAGAAGCTAAAACACAAGAAAATGAGAAGCTGCAATCTGCTTTGAAAGATATGCAGTTTCAATTGAAAGAAACAAAAGCGATGTTTGAGAAGGAACGTGAAGCTGCAAAGAAGGCTGCAGATATTATACCAATTGTGAAGGAGGTTCCAGTTCTTGATAATGCAATGATTGAGAAAATTTCCTGTGAAAATGAAAAGCTCAAGGCGTTGGTAAATTCACTGGAACAGAAAATTGATGAAACAGAGAAAAAGTATGAAGAGGCAAACAGAGTTAGTGAAGAAAGGTTGAAACAAGCATCAGAGGCAGAAACAAAAATTATTCAATTAAAGACTGCTATGCAGAGGCTTGAAGAAAAATTCTCAAATATTGAATCTGAAAATCAGATTCTTCGGCAGCAGACCTTCCTGAAAACACCAGTAAAGAAAATGGCTGACCATCTTCCTATTGCAGCTGCAGAGAAATTTCAGCTTGTAAAATTGAACCTTTTGCGGTTTGATGCTAAACTGGAGAACGGTAACCATTCGATCGAAGATAACAGAATCGATGAGCAGTTTGTAACACCCGTGAAAACGCTGAAGAGAATTAGCTCAGAATCTGAAATTAAGTTGAGTAGATCGCATTTTGAACATCAACAAGAGAATGTTGATGCTCTCGTTAGTTGTGTCATGAATAACATTGGGTTTAGTAATGGGAAGCCTGTAGCTGCATTTACCATTTATAAATGCCTTCTTCACTGGAAATCTTTTGAAGCTGAAAAAACAAGTGTATTTGATCGCCTAATTCAGATGATTGGATCTGCAATAGAGACTCGCATTGTCATTGATGGTCGTAGGTTCAAAACCCCCCAGGATAATCAAGATAACAATGATCATCTAGCCTATTGGTTGTCAAACACATCCGCACTACTGTTCTTGCTTCAACGAAGCTTGAAAGCTCCTGGTGCTCCTCGAAAACCTCCACCTTCAACATCCTTATTTGGAAGGATGACTATGGGTTTTCGTTCGTCTCCTTCTTCCAACAATCTAGGATCTGCACTTAAGGTCGTACGCCAAGTGGATGCTAAATATCCAGCTTTGCTATTCAAGCAGCAGCTGACTGCATATGTCGAGAAAATATTTGGAATTATCCGAGATAACTTGAAGAAGGAGTTGACATCATTGCTTTCCTTGTGTATCCAAGCACCAAGAATTTCGAAAGGAGTATTGCGATCTGGAAGATCGTTTGGGAAAGATACTCAAACAAATTACTGGCAGAGCATCATAGAAAGCCTTAACTTGCTTCTCTGTACATTGAAAGAAAATTTTGTTCCACAAATTCTCATCCAGAATGTCTTTGTTCAAAACTTTTCGTATATTAATGTTCAACTCTTCAATAGCCTCCTTCTCCGTCGAGAATGTTGTACATTTAGCAATGGGGAATATGTAAAATCTGGGTTAGCTGAGTTGGAGCTCTGGTGCTGCCAGGCAAAAGAGGAGTATGCTGGTGCTTCTTGGGATGAGCTTAAACACATAAGACAAGCTGTTGGCTTCTTGGTTATACATCAGAAATACAGAATTTCCTACGATGAAATTACCAATGATCTTTGCCCTATCCTGAGCGTCCAGCAACTTTATAGAATATGTACACTCTACTGGGACGACAACTATAACACTCGAAGCGTATCACCTGATGTAATATCTAGTATGAGAGTGCTCATGACTGAGGACTCCAACAATGCAGTCAGCAGTTCCTTCCTATTGGATGACAATTCCAGCATTCCCTTCTCGATCGAAGACCTATCAAACTCAGTGCAAGAGAAAGATTTCTCTGGTGTGAAGCCCGCCGACGAACTACTCGAGAACCCAGCCTTCCAATTTTTACATGAGTAA 4806 40.93 MASTTGLVVGSLVWLEDSEEAWIEGEVLELHGEEIKVLCTSGKTVVVKAANVYPKDSEVPPCGVDDMTKLAYLHEPGVLHNLKLRYDINEIYTYTGNILIAVNPFTKLPHLYDSYMMAQYKGAAFGELSPHPFAVADSAYRHFSTILLLMVNEKKSQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEEVKKYKLGNPRDFHYLNQSNCHALDGIDDAKEYIATRKAMEVVGISSEEQDGIFRVVAAILHLGNIEFAKGKEADSSVPKDEKSWFHLRTAAELFMCDEKALEDSLCKRVIVTRDETITKWLDPNSAALSRDALAKIVYSRLFDWLVDKINNSIGQDPDSKFLIGVLDIYGFESFKTNRCPGIWRFLGMLLWRASKSFGCPPETWVFQILELRAYPFFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDFVDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTIAHYAGDVTYQTDLFLDKNKDYVVAEHQALLSASKCSFVSCLFPPLAEESSKSSKFSSIGSRFKLQLVSLLETLSATEPHYIRCVKPNNLLKPAIFENKNILQQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEVLDGRYNWFLAFFRLQMTACKRLLEKVGLKGYQIGKTKVFLRAGQMAELDALRTEILGRSASIIQRKVRSYLARRSFVLLRRSAICLQSACRGNKLSSTNFCTGQLAREVFEGLRREASSLMIQRNLRMHICRKAYKEKYSSAVSIQTGMRGMAARNELRFRRQSKAAIIIQSYCRRYLAQLHYKKLKKVAITTQSAWRGRVARKELRKLKMAAKETGALQAAKNKLEKQVEELTWRLQLEKRMRADLEEAKTQENEKLQSALKDMQFQLKETKAMFEKEREAAKKAADIIPIVKEVPVLDNAMIEKISCENEKLKALVNSLEQKIDETEKKYEEANRVSEERLKQASEAETKIIQLKTAMQRLEEKFSNIESENQILRQQTFLKTPVKKMADHLPIAAAEKFQLVKLNLLRFDAKLENGNHSIEDNRIDEQFVTPVKTLKRISSESEIKLSRSHFEHQQENVDALVSCVMNNIGFSNGKPVAAFTIYKCLLHWKSFEAEKTSVFDRLIQMIGSAIETRIVIDGRRFKTPQDNQDNNDHLAYWLSNTSALLFLLQRSLKAPGAPRKPPPSTSLFGRMTMGFRSSPSSNNLGSALKVVRQVDAKYPALLFKQQLTAYVEKIFGIIRDNLKKELTSLLSLCIQAPRISKGVLRSGRSFGKDTQTNYWQSIIESLNLLLCTLKENFVPQILIQNVFVQNFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKEEYAGASWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPDVISSMRVLMTEDSNNAVSSSFLLDDNSSIPFSIEDLSNSVQEKDFSGVKPADELLENPAFQFLHE 1601
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 1339129 1358807 - ClCG06G001310.2 Cla06g00123 274315
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00123 1601 PANTHER MYOSIN-14 491 1599 - -
Cla06g00123 1601 PANTHER MYOSIN-14 6 451 - -
Cla06g00123 1601 Gene3D Kinesin motor domain 65 707 IPR036961 -
Cla06g00123 1601 SMART MYSc_2a 57 786 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla06g00123 1601 Gene3D - 788 846 - -
Cla06g00123 1601 Gene3D - 847 896 - -
Cla06g00123 1601 Gene3D - 897 946 - -
Cla06g00123 1601 CDD MyosinXI_CBD 1188 1570 IPR037975 GO:0007015
Cla06g00123 1601 ProSiteProfiles IQ motif profile. 847 876 IPR000048 GO:0005515
Cla06g00123 1601 Pfam Myosin N-terminal SH3-like domain 10 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cla06g00123 1601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 826 IPR027417 -
Cla06g00123 1601 Pfam Myosin head (motor domain) 64 451 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla06g00123 1601 Pfam Myosin head (motor domain) 491 773 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla06g00123 1601 ProSiteProfiles Dilute domain profile. 1237 1547 IPR002710 -
Cla06g00123 1601 Coils Coil 941 1007 - -
Cla06g00123 1601 Pfam DIL domain 1423 1526 IPR002710 -
Cla06g00123 1601 ProSiteProfiles IQ motif profile. 870 899 IPR000048 GO:0005515
Cla06g00123 1601 CDD MYSc_Myo11 76 773 IPR036018 -
Cla06g00123 1601 Coils Coil 1036 1112 - -
Cla06g00123 1601 ProSiteProfiles IQ motif profile. 895 920 IPR000048 GO:0005515
Cla06g00123 1601 PANTHER MYOSIN 491 1599 - -
Cla06g00123 1601 ProSiteProfiles IQ motif profile. 790 814 IPR000048 GO:0005515
Cla06g00123 1601 Gene3D - 11 55 IPR008989 GO:0003774|GO:0005524|GO:0051015
Cla06g00123 1601 SMART DIL_2 1422 1529 IPR002710 -
Cla06g00123 1601 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cla06g00123 1601 Gene3D - 259 317 - -
Cla06g00123 1601 Gene3D - 712 784 - -
Cla06g00123 1601 SMART iq_5 787 809 IPR000048 GO:0005515
Cla06g00123 1601 SMART iq_5 894 916 IPR000048 GO:0005515
Cla06g00123 1601 SMART iq_5 917 939 IPR000048 GO:0005515
Cla06g00123 1601 SMART iq_5 846 868 IPR000048 GO:0005515
Cla06g00123 1601 SMART iq_5 869 891 IPR000048 GO:0005515
Cla06g00123 1601 Pfam IQ calmodulin-binding motif 812 826 IPR000048 GO:0005515
Cla06g00123 1601 Pfam IQ calmodulin-binding motif 920 939 IPR000048 GO:0005515
Cla06g00123 1601 Pfam IQ calmodulin-binding motif 790 808 IPR000048 GO:0005515
Cla06g00123 1601 Pfam IQ calmodulin-binding motif 897 916 IPR000048 GO:0005515
Cla06g00123 1601 Pfam IQ calmodulin-binding motif 850 868 IPR000048 GO:0005515
Cla06g00123 1601 Gene3D Myosin VI head, motor domain, U50 subdomain 319 646 - -
Cla06g00123 1601 ProSiteProfiles Myosin motor domain profile. 62 785 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla06g00123 1601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 947 IPR027417 -
Cla06g00123 1601 Gene3D - 446 668 - -
Cla06g00123 1601 PRINTS Myosin heavy chain signature 203 230 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla06g00123 1601 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla06g00123 1601 PRINTS Myosin heavy chain signature 156 181 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla06g00123 1601 PRINTS Myosin heavy chain signature 436 464 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla06g00123 1601 PRINTS Myosin heavy chain signature 527 555 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla06g00123 1601 PANTHER MYOSIN 6 451 - -
Cla06g00123 1601 ProSiteProfiles IQ motif profile. 918 947 IPR000048 GO:0005515
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00451 Cla-Chr3:5097394 Cla06g00123 Cla-Chr6:1339129 1.58E-07 dispersed
Cla06g00123 Cla-Chr6:1339129 Cla09g00324 Cla-Chr9:3151804 0 dispersed
Cla03g01472 Cla-Chr3:30225431 Cla06g00123 Cla-Chr6:1339129 0 transposed
Cla05g00393 Cla-Chr5:3553666 Cla06g00123 Cla-Chr6:1339129 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00123 K10357 - csv:101208630 2819.65