Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00135 ATGGCACCGCCTCGGGTTTCAAAAGCTTTTCGTGCAATGAGGGATATTGGGATCAGTGAAGATAAGACAAAACCAGTCTTAAAGAAACTCCTGAAATTGTATGATAAGAACTGGGAACTTATTGAAGAAGAGAACTATAGAGTTCTTGCAGATGCAATATTTGATGAGGAAGATAGTAAGGTTGTAGAAGAGAAGAAATGTCAGAATTCTCAAGTGGAAGATTTTGGGGAAGATGTTCAGGGGCCTGATGAGCCAGAACGCCCTCTGAAAAGGTTGCGCTTAAGAGGCCAAGAAACCCAGGTTGATGGGATGGCTTTAAAAAAGCCCAAATTGGAAGAGGATGCGTTTCCTGAAACCAGTTCCCAACAGCAGATGCAGTTAAGTGGGCCTAAGAGATCTGAAACTGGTCCAAGTTCTTCTCGTCGTGTAGACAAAGGGAAGGAACCTGTATCACCCCGTGTGGTTACGAGAGTGAAAAAATCTAGCCTAGAGAAATCATCTGCTTCTGTTCGTATTAAGGAACCAGGGGCTGAGTCAGGTGTCAAAAATTCCATAGTGAGGGCATCTGGGTCTCTTGCGTTGCTCAAACCTAAAGATGAACCAATTACTGACGATGCATTTACAAATGAGTTGCCTATTGCTGCGATTCATCCAGATTCTTCAAGAAAAGAAGATCATTCCATTGCAAATGATTCAGTTAGGAAGGCAGATGGCCAAGTTGCTCAAGTATCATATCCTTCAGACGGAAGTAACAAAGGTGATGGTACGGAAACATCATCATGTAAGAGGATTACAGGCAGTGAGCTTGCAACTGTTATGGAAGAATTACATCCTAACTTAGAGATTGCATCGTCGCCACTGGGAGAGGTAAAAATTTCTTTGTGCTGCGACTCCACTTTTGGACGACCAGATTTCCGTATGCCTAGTCGTGATGCAGTTATAAAATATATGGAGGAAAAATGTCTGCAGTCATATAAAATCATTGACCCCACGTTTTCTGTTATGAAACTGTTGAGTGATATGTGTGAGTGCTTCTTGGAATTGGGAACTGATTCTCCTGATGAACAACAGGAAGGTTCAATTAGTAGAGTTCCACTTCTAGATGTAATGGAGAGTTCAGATCCAATGGATACTCCAGGGACTGTTGCCAATGAAGGAAATTTGGATCTACGCACTTCTGTGAATGAACCAGTCAATACTATCTCTGATGGAGAACTTGCACCACAAGTCCCTAGTATGGTAGAGTCTTCAAGTGTTTCCAATCACCAGACTATCCATGAAACCTCTAAAAGCAGCAAAGAAATACCAAATGGTCATTCTGAAGATGAAGCGAGGAAGGAGTTTGATAATCTTGAGCCTGCAAATCCGCAGAATTTGATGGTTGTTTCACAGAGTCAACAAGCTACTGATGAATTAAGCTTCTCTCATGATGTGGTTGATATAGCCAAGGGAGAAGAAAGGGTTCAAATTTCTTGGGTGAATGAAATTAATAAAGAGCATCCACCATTCTTTCACTATATACCTCGCAGTCTAATATTCCAAAATGCTTTTGTAAATTTCTCTCTCTCTCTGATTGGTAATGATAATTGTTGCCAGTCTTGTTTTGGAAATTGCCTTACATCTTCTGTCCCTTGTGCTTGTGCACGGGAAACTGGGGATAAGTATGCATACACACCAGAAGGTCTTGTTAAGGAAGATTTTTTGGATGAGTGGACCTCTCTTGCTCGTGAATCTCAAGGAAACCACCAGTTCTATTGCAAAGAGTGTCCTCTTGAAAGATCAAAGAATGATAATTGTTTAGAACCCTGCAAAGGCCACTTAGAGAGGAAGCTTATAAAAGAATGTTGGAGTAAATGTGGTTGCAATAAGCATTGTGGCAATAGAGTGGTGCAGCGAGGAGTAAAGTGCAAGTTGCAGGTATTTTTTACTTCCGAAGGAAAAGGATGGGGCCTTCGAACCCTTGAAGACCTACCTAAAGGCTCTTTTGTTTGTGAATATGCCGGAGAAATATTAACCATTTCAGAAATGTATCATAGAAAGGTGCAAAGCACCAAAAATGGGGAGCATACCGACCCAGTATTATTAGATGGCTTTTGGAATAAAGAAGGGCCTTTGAAGGAGGAAAAAGCTCTCTGCTTGGATGCAACAAACTTTGGGAACGTTGCCAGATTTATCAATCACAGATGCTTTGATGCAAACTTGGTTGACATAGCAGTTGAGATAGAGACTCCGGATCATCATAATTATCATGTATTGACTCTTGCAAGTTTTGCCTTTTCTTTATCATTTTTGTGTCAGCCGTTCTTTCTCTACCATAGTGATCATCTTATTCAGTTCCTTTCCTCTTTGCAGCTTGCCTTATTCACTACAAGAAAAATAGATGCCATGGAAGAGCTAACTTGGGATTATGGAATCGATTTTGATGATCTTGATCATCATGTTAAGCCATTTCTCTGTCAATGTGGCAGCAAGTTCTGCAGAAATATGAAACGATCTTCTAGAAGGGGAGGATCCGCAGGGAACAAGTTTCGGATGTCACTGGGTCTTCCGGTGGCTGCTACTGTCAACTGTGCAGACAATACGGGAGCTAAGAATCTCTACATCATTTCAGTGAAAGGGATCAAAGGTCGCCTCAATAGGTTGCCATCCGCATGTGTCGGTGATATGGTTATGGCCACCGTTAAGAAAGGCAAGCCTGATCTCAGGAAGAAGGTCTTGCCTGCTGTTATTGTTAGGCAGCGCAAGCCGTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAATGCTGGTGTTATCGTCAATCCCAAGGGCGAGATGAAAGGTTCGGCTATTACTGGCCCCATCGGAAAGGAATGCGCTGATCTCTGGCCAAGGATTGCAAGTGCTGCGAATGCCATCGTGGGTGAGCATTGGTCGGATGGGGTCGGTTTTCCTTTTTATTGTGACATGGCTGGCTTGGTCACTGGTTCCCAACACTATCCCCACGGTGCTGATGAGAGTCTTCGTGGACCTCCACTATCGTCGAAAATATGTCGAATTTGCAGTGATGAAATAGGACTAAAACAAGATGGAAAAGTATTTGTGGCATGTCTTGTGTGCAATTTCCCTGTTTGTCGACCTTGTTATGAGTATGAAAGGAGCGAAGGCAATAGGTGTTGTCCCCAATGCAACACTCGCTATAAGCGTCACAAAGGCTCACCCAGAGTGATCGGCGACGAGGAAGAAGGTGACGATGCCGATGATTTTGACGATGAGTTCCCCATGAAACACCACAACAATGACGAATTTGAAACAAAGCAGCCTAATCATTCGGAAAACGATAACTACAATGAGCAGAATTGGCATAAAAATGTTCAGAATTCGTTCTCAGTTGCTGGAAGTGTGAATGGGAAGGATATGGAAGGGGAAAAAGAGGGTTATGGAAGTGTAGAATGGAAGGAGAGAATTGATAAGTGGAAAGTGAGGCAAGAGAAGAGAGGTTTGGGAAACAAAGAAGATGGAAGTAACAATGATCAAGAAGAAGATGACTACTTATTGGCAGAAGCCCGGCAGCCGCTATGGCGGAAACTTCCAATATCGTCAAGCAAAATCAGTCCATATCGCATCGTCATTGTCCTCCGCCTCATAATTCTTGCATTCTTCTTCCGATTTCGGATCCTTACTCCGGCCTACGACGCCTTCCCCTTGTGGCTGATCTCCGTCATCTGCGAAATTTGGTTCGGCTTCTCCTGGATTCTCGATCAGTTCCCCAAATGGGCTCCCATCAACCGGGAGACCTACCTAGATCGCCTCTCCATGCGCTTCGAGCGCGACGGCGAGCCCAACCGCCTCTCACCGATCGACTTCTTCGTCAGCACGGTGGACCCTCTGAAAGAGCCGCCGATCATAACCGCCAACACCGTCCTTTCCATCCTCTCGGTCGACTATCCGGTGGAGAAGGTCAGCTGCTACGTATCGGACGATGGAGCGTCGATGCTGCTGTTCGATACGCTGGCGGAGACTGCGGAGTTTGCTCGGAGATGGGTGCCGTTTTGCAAGAAGTTCAGTATCGAACCTAGGGCTCCGGAGTTCTATTTCTCACAGAAGATGGATTACTTGAAGGATAAGGTGCTGGCTAGCTTTGTGAAGGAGAGGAGGGCAATGAAGAGGGAATACGAAGAGTTCAAGGTGAGGATCAACGCGTTGGTGGCGAAGGCTCAGAAGAAACCAGAAGAGGGATGGGTTATGCAAGATGGCACTCCATGGCCTGGAAACCTCACCCGTGATCATCCTGGCATGATACAGGTGTATCTGGGAAGTGAAGGTGCACTTGACGTGGAAGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAACGCCCTGGATATCAACACCACAAGAAAGCTGGTGCTATGAATGCTCTTGTTCGAGTCTCTGCAGTCCTCACAAATGCACCGTTCATCTTAAATCTGGATTGTGATCACTACGTCAACAATAGCAAAGCTGTAAGGGAAGCCATGTGCTTTCTAATGGACCCTCAGCTTGGAAAGAAACTATGCTATGTTCAGTTTCCTCAAAGATTTGATGGTATTGATCGTCACGACAGATATGCTAATCGGAATATCGTGTTCTTTGATATCAACATGCGAGGGCTAGATGGAATCCAAGGCCCAGTTTATGTTGGCACAGGATGTGTCTTCAACAGGCAGGCTTTATATGGATATGAACCACCAGTCTCTGAGAAAAGGCCAAAGATGACATGCGATTGTTGGCCTTCCTGGTGTTGCTGCTGCTGCGGTGGTTCAAGGAAATCAAAATCCAAGAGGAAAGGAGAAAGAGGTTTGCTTGGAGGCCTGTTCAAGAAGAAGAAAATGATGGGGAAGAGTTATGTAAGGAAAGCGCCGGGACCAGTTTTTGATCTTGAAGAGATTGAAGAAGGGTTCGAAGGTTATGATGAGTTGGAGAAGTCATCACTCATGTCACAAAAGAATTTCGAGAAAAGATTCGGACAGTCACCAGTTTTCATCGCTTCTACCCTTAAGGAAGATGGAGGTCTTCCAGAAGGGACTAACAGCACTTCACTTGTTAAAGAAGCCATCCATGTGATTAGCTGTGGTTATGAAGAGAAAACAGAATGGGGAAAAGAGATAGGTTGGATTTACGGTTCTGTCACTGAGGATATTTTGACTGGATTCAAGATGCATTGTAGAGGATGGAAGTCAGTGTACTGCATGCCCCAGAGACCAGCTTTCAAGGGATCGGCTCCAATAAATCTTTCGGATCGTTTGCACCAAGTTCTGAGATGGGCTTTAGGTTCTGTTGAAATTTTCCTTAGCCGACACTGCCCGCTATGGTATGCATATGGAGGAAAGCTAAAATGGCTTGAAAGGCTTGCCTACATCAACACTATTGTTTACCCTTTTACTTCCATTCCATTACTTGCTTACTGCACAATCCCAGCTGTCTGTCTTCTCACTGGAAAATTCATTATCCCCACCTTGACGAACTTGGCTAGCGTCTGGTTCATGGCGTTGTTTATTTCCATCATTGCGACGGCCGTGCTGGAGCTTCGATGGAGTGAAGTGAGTATTGAAGACTTATGGCGTAATGAGCAATTCTGGGTGATTGGTGGTGTCTCCGCACATCTTTTTGCAGTGTTCCAGGGCCTTCTCAAGGTCCTTGGCGGAGTAGACACCAACTTCACAGTTACAGCGAAAGCAGCTGAAGACACCGAGTTTGGAGAGCTCTATCTTTTCAAGTGGACGACACTCCTCATCCCGCCGACCACTCTCATAATCTTGAACATGGTGGGAGTGGTTGCTGGAGTTTCAGATGCAATCAACAATGGCTACGGTTCATGGGGTCCTCTGTTTGGAAAACTGTTTTTTGCTTTCTGGGTAATTGTTCATCTCTATCCTTTCCTCAAGGGTCTGATGGGAAGACAAAACAGGACCCCCACCATCGTCGTCCTTTGGTCCGTGCTTCTTGCTTCCATATTTTCACTGGTTTGGGTGCGAATTGATCCCTTCTTGCCCAAGCAAACAGGTCCTGTCCTCAAACAATGTGGAGTTGATTGCTAG 6072 44.85 MAPPRVSKAFRAMRDIGISEDKTKPVLKKLLKLYDKNWELIEEENYRVLADAIFDEEDSKVVEEKKCQNSQVEDFGEDVQGPDEPERPLKRLRLRGQETQVDGMALKKPKLEEDAFPETSSQQQMQLSGPKRSETGPSSSRRVDKGKEPVSPRVVTRVKKSSLEKSSASVRIKEPGAESGVKNSIVRASGSLALLKPKDEPITDDAFTNELPIAAIHPDSSRKEDHSIANDSVRKADGQVAQVSYPSDGSNKGDGTETSSCKRITGSELATVMEELHPNLEIASSPLGEVKISLCCDSTFGRPDFRMPSRDAVIKYMEEKCLQSYKIIDPTFSVMKLLSDMCECFLELGTDSPDEQQEGSISRVPLLDVMESSDPMDTPGTVANEGNLDLRTSVNEPVNTISDGELAPQVPSMVESSSVSNHQTIHETSKSSKEIPNGHSEDEARKEFDNLEPANPQNLMVVSQSQQATDELSFSHDVVDIAKGEERVQISWVNEINKEHPPFFHYIPRSLIFQNAFVNFSLSLIGNDNCCQSCFGNCLTSSVPCACARETGDKYAYTPEGLVKEDFLDEWTSLARESQGNHQFYCKECPLERSKNDNCLEPCKGHLERKLIKECWSKCGCNKHCGNRVVQRGVKCKLQVFFTSEGKGWGLRTLEDLPKGSFVCEYAGEILTISEMYHRKVQSTKNGEHTDPVLLDGFWNKEGPLKEEKALCLDATNFGNVARFINHRCFDANLVDIAVEIETPDHHNYHVLTLASFAFSLSFLCQPFFLYHSDHLIQFLSSLQLALFTTRKIDAMEELTWDYGIDFDDLDHHVKPFLCQCGSKFCRNMKRSSRRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIVGEHWSDGVGFPFYCDMAGLVTGSQHYPHGADESLRGPPLSSKICRICSDEIGLKQDGKVFVACLVCNFPVCRPCYEYERSEGNRCCPQCNTRYKRHKGSPRVIGDEEEGDDADDFDDEFPMKHHNNDEFETKQPNHSENDNYNEQNWHKNVQNSFSVAGSVNGKDMEGEKEGYGSVEWKERIDKWKVRQEKRGLGNKEDGSNNDQEEDDYLLAEARQPLWRKLPISSSKISPYRIVIVLRLIILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLSMRFERDGEPNRLSPIDFFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLAETAEFARRWVPFCKKFSIEPRAPEFYFSQKMDYLKDKVLASFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRQALYGYEPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKRKGERGLLGGLFKKKKMMGKSYVRKAPGPVFDLEEIEEGFEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPQRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIIATAVLELRWSEVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFLPKQTGPVLKQCGVDC 2023
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 1519844 1543503 + ClCG06G001460.2 Cla06g00135 274327
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00135 2023 MobiDBLite consensus disorder prediction 219 261 - -
Cla06g00135 2023 CDD mRING-HC-C4C4_CesA_plant 1011 1061 - -
Cla06g00135 2023 SMART preset_2 478 620 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cla06g00135 2023 SUPERFAMILY RING/U-box 1008 1084 - -
Cla06g00135 2023 SUPERFAMILY SET domain 783 827 IPR046341 -
Cla06g00135 2023 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 1138 2023 - -
Cla06g00135 2023 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 1008 1099 - -
Cla06g00135 2023 MobiDBLite consensus disorder prediction 1085 1106 - -
Cla06g00135 2023 SMART set_7 636 810 IPR001214 GO:0005515
Cla06g00135 2023 Pfam Cellulose synthase 1282 2016 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cla06g00135 2023 MobiDBLite consensus disorder prediction 411 443 - -
Cla06g00135 2023 Pfam Pre-SET motif 481 628 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cla06g00135 2023 Pfam Zinc-binding RING-finger 1008 1079 IPR027934 -
Cla06g00135 2023 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 866 IPR025776 -
Cla06g00135 2023 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1296 1834 IPR029044 -
Cla06g00135 2023 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1388 1574 IPR029044 -
Cla06g00135 2023 MobiDBLite consensus disorder prediction 137 167 - -
Cla06g00135 2023 Pfam Ribosomal protein L14p/L23e 851 969 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cla06g00135 2023 Gene3D Ribosomal protein L14 830 969 IPR036853 GO:0003735|GO:0005840|GO:0006412
Cla06g00135 2023 SMART Ribosomal_L14_2 848 969 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cla06g00135 2023 MobiDBLite consensus disorder prediction 81 97 - -
Cla06g00135 2023 CDD SET_SETDB-like 502 804 - -
Cla06g00135 2023 MobiDBLite consensus disorder prediction 116 136 - -
Cla06g00135 2023 MobiDBLite consensus disorder prediction 243 261 - -
Cla06g00135 2023 MobiDBLite consensus disorder prediction 64 180 - -
Cla06g00135 2023 MobiDBLite consensus disorder prediction 1066 1113 - -
Cla06g00135 2023 ProSitePatterns Ribosomal protein L14 signature. 908 934 IPR019972 -
Cla06g00135 2023 SUPERFAMILY Ribosomal protein L14 840 969 IPR036853 GO:0003735|GO:0005840|GO:0006412
Cla06g00135 2023 Coils Coil 1380 1400 - -
Cla06g00135 2023 Pfam SET domain 648 804 IPR001214 GO:0005515
Cla06g00135 2023 Gene3D SET domain 481 829 IPR046341 -
Cla06g00135 2023 ProSiteProfiles SET domain profile. 636 804 IPR001214 GO:0005515
Cla06g00135 2023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 998 1086 IPR013083 -
Cla06g00135 2023 SUPERFAMILY SET domain 477 755 IPR046341 -
Cla06g00135 2023 MobiDBLite consensus disorder prediction 411 426 - -
Cla06g00135 2023 Gene3D - 1 59 IPR043017 -
Cla06g00135 2023 Pfam Ubiquitin-binding WIYLD domain 5 58 IPR018848 GO:0018024
Cla06g00135 2023 Hamap 50S ribosomal protein L14 [rplN]. 848 969 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cla06g00135 2023 ProSiteProfiles Pre-SET domain profile. 537 633 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cla06g00135 2023 MobiDBLite consensus disorder prediction 427 443 - -
Cla06g00135 2023 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1138 2023 - -
Cla06g00135 2023 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1008 1099 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00703 Cla-Chr3:8508929 Cla06g00135 Cla-Chr6:1519844 0 dispersed
Cla06g00135 Cla-Chr6:1519844 Cla09g00379 Cla-Chr9:3707850 0 dispersed
Cla06g00695 Cla-Chr6:8843153 Cla06g00135 Cla-Chr6:1519844 5.60E-91 dispersed
Cla07g00123 Cla-Chr7:1424254 Cla06g00135 Cla-Chr6:1519844 2.25E-83 dispersed
Cla10g01498 Cla-Chr10:30208466 Cla06g00135 Cla-Chr6:1519844 4.17E-16 dispersed
Cla11g01012 Cla-Chr11:19897795 Cla06g00135 Cla-Chr6:1519844 3.01E-130 dispersed
Cla11g01685 Cla-Chr11:30411284 Cla06g00135 Cla-Chr6:1519844 3.25E-12 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61218 PF03552 Cellulose_synt 0 CL0110 Cla TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00135 K10999 - csv:101205733 1965.27