Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00143 ATGGAGACCACCACCTATTTTCCATTTTTAGTTACATTCTTGGCTTTGCTTTCCATTTTCTTGTTCCAAAAAACAAAAAACAGAACAAAAAAGAATCTCCCTCCCACTCCTCTGGCTCTCCCAATCCTTGGCCATCTTCATCTCCTCAAACACCCAATCCACAGAACTCTCCACTCTCTCGCCCAAAAATACGGCCCAATCTTCACTCTCCGTCTCGGCGCTCGTCTCGTCGTCGTCGTCTCCTCCACATCCGCCGTCGAAGAATGCTTCACAACAAACGACATCGTTTTCGCAAACCGACCCGAATTCGTCTCCGGCAAGTACCTCAGCTACGGTAACAGCACGCTTGGGGCAGCCCCATATGGCGATCATTGGCGCAATTTACGGCGGTTGAGCGCAACGGAAGTCTTGTCGTCGATCCGGTTGAACGTGTCAGCAGGAATCCGAAAGGAAGAGATCGAGATTTTGCTTAGGAAATTGTACAGAGTTTCGAGAACAGAGTTTGGGAAAGTGAAGTTGAAATCATTGTTCTCGGAGTTGACATTCAATATGATAATGAGAATGGTGGCTGGAAAAAGGTATTATGGGGAAGAAGTGAGTGAATTGGAAGAGGCGAAAAAGTTCAGAGAAATAATGGAGAAGTCGTTCCAATTGGGATCATATCCAGGGGATTTCTTGCCATTCTTGAAATGGGTTGATTGGCAATACACAAAAAGAGTGGAAAGTCTTGGAAGAGATACGGATTCGTTCTTGCAAAATTTGGTGGATGAACATCGAAGAAATGAAGAGGAAGGGAAAAAGGGGAATACAATGATTAGCCATCTCCTCTGTTTGCAGAAAACTCAGCCCGACTATTACACTGATGAAATTATTAAAGGCCTCATCGTTACAATTTTGTCAGCAGCAACGGAGACATCATCAGTGACAATAGAATGGGCAATGTCAAATCTCCTAAACCATCCAGAATCATTAAACAAAGTGAAGAATGAATTGGACACAAAAATAGGGGAAGACCGGATTCTAGATGAAGAAGATATCTCAAATTTACCATATCTTCAAAATGTAATTTCAGAGACACTACGCCTTTATCCAGCAGCTCCACTCTTAGCTCCACATTTATCATCACAAAATTGTTGTTTAGGAGGATACAACATTCCAGCTGACACAATCTTAATGGTCAATGCATGGGCTGTTCAAAGAGATCCCAAAGTTTGGGAAGATTCAACAAGCTTTAAACCTGAGAGGTTTGAAAGTGAAGGAGGAGCTACCAATAATGGTTATAAATTCTTGCCATTTGGATTGGGAAGAAGGGCTTGTCCTGGGATGGGAATGGCTAACCGTGTGGTGGGCTTGACTTTGGGTTCGTTGATTCAGGGGTTTGAGTGGAAGAGAGTGAGTGAAAAGGAGATTGATATGACTGAAGGTCAAGGGATTTCTATGCCTAAAGTTGAGCCATTGGAGGCATTGTGTAGAGCTCGTCCCATCATCAACAAGCTTGCATTAGATTAA 1509 43.27 METTTYFPFLVTFLALLSIFLFQKTKNRTKKNLPPTPLALPILGHLHLLKHPIHRTLHSLAQKYGPIFTLRLGARLVVVVSSTSAVEECFTTNDIVFANRPEFVSGKYLSYGNSTLGAAPYGDHWRNLRRLSATEVLSSIRLNVSAGIRKEEIEILLRKLYRVSRTEFGKVKLKSLFSELTFNMIMRMVAGKRYYGEEVSELEEAKKFREIMEKSFQLGSYPGDFLPFLKWVDWQYTKRVESLGRDTDSFLQNLVDEHRRNEEEGKKGNTMISHLLCLQKTQPDYYTDEIIKGLIVTILSAATETSSVTIEWAMSNLLNHPESLNKVKNELDTKIGEDRILDEEDISNLPYLQNVISETLRLYPAAPLLAPHLSSQNCCLGGYNIPADTILMVNAWAVQRDPKVWEDSTSFKPERFESEGGATNNGYKFLPFGLGRRACPGMGMANRVVGLTLGSLIQGFEWKRVSEKEIDMTEGQGISMPKVEPLEALCRARPIINKLALD 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1626534 1628850 - ClCG06G001590.1 Cla06g00143 274335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00143 502 Gene3D Cytochrome P450 19 491 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g00143 502 PANTHER CYTOCHROME P450 10 498 - -
Cla06g00143 502 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 10 498 - -
Cla06g00143 502 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g00143 502 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g00143 502 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g00143 502 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g00143 502 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g00143 502 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g00143 502 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g00143 502 PRINTS E-class P450 group I signature 429 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g00143 502 PRINTS E-class P450 group I signature 439 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g00143 502 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g00143 502 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g00143 502 PRINTS P450 superfamily signature 430 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g00143 502 SUPERFAMILY Cytochrome P450 34 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g00143 502 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 432 441 IPR017972 GO:0005506|GO:0016705
Cla06g00143 502 Pfam Cytochrome P450 34 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00809 Cla-Chr2:10698595 Cla06g00143 Cla-Chr6:1626534 0 dispersed
Cla06g00143 Cla-Chr6:1626534 Cla11g01516 Cla-Chr11:28807477 1.77E-175 dispersed
Cla06g00141 Cla-Chr6:1614335 Cla06g00143 Cla-Chr6:1626534 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00143 K13260 K25488 csv:101207828 869.766