Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00149 ATGGGGCGTTCCCTAGTTGCTGGCCTCTGTTTATGGTTCTCTCTGACATTGGTGATTGCAGATGCTAATGACTCTTCTTTGGGGGGTTTAGTCTGGTCTTCTGCAAAAGAAGAGGGCGATCTCCTTATTGAGCACAGGCCCCAGGAAGATTCCGCCGCCGCCACACCTGTCGTTCACGATGCCGATGGCTTTGATGGCGGCTTTTCTTCCCTCGATAGCATGTTACAGTGGGCTATAGGCCATTCTGATCCTGCAAAACTGAAGGATACTGCACAGGATGTGAAACGATTGTCTCCAAGTGAGATAAAGAAGCGTCAAGAAGAAATTAAGGACCTAATAGAGGAGTTGAAGGTGCCATCAGATGCAAAGCTGATGCAAATTGCGATAGATGACTTGAAAAATTCCTCTCTATCATTGGAAGATCGCCATCGGGCATTACAGGAGCTTTTACTACTCGTTGAGCCAATAGACAATGCAAATGATTTGGACAAACTTGGGGGCCTTGCTGTGCTTATTCATGAGCTTAATCATTTCGATCCTGATATTAGGAAAGTTGCAGCGTGGATTCTTGGAAAAGCAAGTCAGAATAACCCTATTGTTCAAAAGCAGGTATTGGAACTCGGGGCACTAGCAAAATTAGTAACGATGGTAAAATCTGATTTTGTAGAAGAAGCCATCAAGGCATTGTATGCTATTTCATCATTGGTTCAAAATAATTTATCTGGCCAGGAATTATTCTATGCCGAAGCTGGAGAAACCATGCTTCAGGATATTTTAAGCAACTCGAGCATGGATATCAGATTGCAAAAGAAAGCTGTTTTTCTTGCAAGTGATTTGGCTGTGACACAACTAGAAAAAACAGATGAAGCTGAAAGGCCATTTTTTGGAGATCGCCTTTTCTTGAAGTCTGTGGTTGATCTCATCCATTCCACAGACATTGATCTCCAGGAGAAGGCCCTCATTGCTCTAAAGAACCTCCTGCTTTTGAGAACAACGAAAGCTCAAGTTTTAAGAGAATTTTGTGGGTTGGATGTTGCTTTGGAGAGGATGAGGGTGAAGCTGGAGGTATTAAAGGAAGGGGAAGATCACCGAGATTATGCAATGGATGTGGAAGATCTACGAAGCCAAGTGGAGTTACTTTTCCTTGAAAAGCTGGGAAAGAGAATGCAGCGGCCGGTAGCAGCTCTCTCTCACGAACATCCATCCCGGCGGCATCTTTCTCTCTCGAGCACCCATCCCACCGTATTTTCATTTATTACGATGGCTGATGCTCATGAAACTGATAAGAACATTGAAATATGGAAAATTAAGAAGTTGATTAAAGCACTTGAAGCTGCAAGAGGTAATGGGACTAGCATGATCTCTCTCATCATGCCTCCGCGTGATCAAATATCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCTTCGAACATTAAGAGCAGGGTAAATCGTCAATCTGTTTTGGGTGCTATCACGTCTGCTCAGCAGAGACTCAAGCTGTATAACAAGGTTCCTCCAAATGGGCTTGTGCTTTATACTGGGACAATCGTGACTGAAGATGGAAAAGAAAAGAAAGTCACAATTGATTTTGAGCCTTTCAGGCCTATAAATGCATCTCTTTATCTCTGCGACAACAAGTTCCACACGGAAGCCCTGAATGAACTGTTAGAATCTGATGACAAGTTTGGCTTCATTGTCATGGATGGTAATGGAACACTCTTTGGCACATTGAGTGGTAACACACGTGAAGTCCTTCACAAATTTAGTGTCGACCTTCCTAAGAAACATGGAAGAGGAGGTCAGTCAGCACTTAGGTTTGCCCGTCTTCGGATGGAGAAGCGGCACAACTATGTGAGGAAAACAGCAGAGCTTGCAACCCAGTTCTTTATTAATCCTGCCACTAGTCAACCCAATGTTGCAGGATTGATACTGGCTGGATCAGCTGACTTCAAAACAGAGCTCAGTCAATCCGACATGTTTGATCCTCGTCTTCAGGCCAAAATACTTAATGTTGTCGATGTCTCTTATGGAGGGGAAAATGGATTCAATCAAGCTATTGAATTGTCATCCGAGATCTTGTCTAATGTAAAATTTATACAGGAGAAGCGCTTGATTGGAAAATACTTTGAAGAGATTAGCCAGGACACAGGGAAGTATGTTTTTGGTGTTGACGACACACTGAAAGCTCTGGAGATGGGTGCTGTTGAAATACTTATTGTTTGGGAAAATTTAGATATCAATAGGTATGTATTAAAGAATGCTGCCACTGGTGAGATTATTATAAAGCATTTGAACAAGGAACAGGAAGCCAATCAGAGCAACTTTCGTGACACCGCCACCTCTGCTGAGTTGGAGGTTCAAGAAAAGATGGCCTTGCTGGAATGGTTTGCAAACGAGTACAAGAAGTTTGGTTGCACCCTGGAGTTCGTTACCAACAAATCACAGGAAGGATCACAGTTCTGCAGAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTTGATGAACTATCTGATGGGGAAGAGTACGGGTTCGCGGAGGTTAGTCTTGGTTTGAACTGGAAAAATTTGTCGAGGCTTTATAAGGGGTTATGTCCTTTTGATCTGGATTCGGCGCCTATCTGA 2652 43.21 MGRSLVAGLCLWFSLTLVIADANDSSLGGLVWSSAKEEGDLLIEHRPQEDSAAATPVVHDADGFDGGFSSLDSMLQWAIGHSDPAKLKDTAQDVKRLSPSEIKKRQEEIKDLIEELKVPSDAKLMQIAIDDLKNSSLSLEDRHRALQELLLLVEPIDNANDLDKLGGLAVLIHELNHFDPDIRKVAAWILGKASQNNPIVQKQVLELGALAKLVTMVKSDFVEEAIKALYAISSLVQNNLSGQELFYAEAGETMLQDILSNSSMDIRLQKKAVFLASDLAVTQLEKTDEAERPFFGDRLFLKSVVDLIHSTDIDLQEKALIALKNLLLLRTTKAQVLREFCGLDVALERMRVKLEVLKEGEDHRDYAMDVEDLRSQVELLFLEKLGKRMQRPVAALSHEHPSRRHLSLSSTHPTVFSFITMADAHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVLKNAATGEIIIKHLNKEQEANQSNFRDTATSAELEVQEKMALLEWFANEYKKFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDGEEYGFAEVSLGLNWKNLSRLYKGLCPFDLDSAPI 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1692446 1700985 - ClCG06G001640.2 Cla06g00149 274341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00149 883 SUPERFAMILY ARM repeat 110 341 IPR016024 -
Cla06g00149 883 Pfam eRF1 domain 2 564 697 IPR005141 -
Cla06g00149 883 SUPERFAMILY L30e-like 698 840 IPR029064 -
Cla06g00149 883 Gene3D eRF1 domain 2 556 697 IPR042226 -
Cla06g00149 883 Gene3D - 104 390 IPR011989 -
Cla06g00149 883 SUPERFAMILY Translational machinery components 562 696 - -
Cla06g00149 883 Pfam Nucleotide exchange factor Fes1 71 162 IPR013918 -
Cla06g00149 883 SMART eRF1_1_2 424 560 IPR005140 -
Cla06g00149 883 Pfam eRF1 domain 1 438 558 IPR005140 -
Cla06g00149 883 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 421 852 IPR004403 GO:0003747|GO:0006415
Cla06g00149 883 Gene3D eRF1 domain 1 416 555 IPR024049 -
Cla06g00149 883 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 432 837 IPR004403 GO:0003747|GO:0006415
Cla06g00149 883 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 426 560 IPR024049 -
Cla06g00149 883 Pfam eRF1 domain 3 701 838 IPR005142 -
Cla06g00149 883 Gene3D - 699 853 IPR029064 -
Cla06g00149 883 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 421 852 - -
Cla06g00149 883 Coils Coil 129 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00793 Cla-Chr4:22980525 Cla06g00149 Cla-Chr6:1692446 3.83E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00149 K03265 - csv:101218139 838.18