Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00150 ATGGAGAATATGAAGCAGTCAGCAATAGGCAGCAAATTAGTTGATAGAAATGATATTATTATTAAAGATGATATGGTCGCGTTGGGAATTGAGGTGAAGGAACGTCTAAGTAAACTGCAGGAAAGTATTGGAATGGAGGAGTTATCAATGCAAAAAAACACAAAACCTTCAATCTACAAAATACCTGAATTCATGAGAGAAGTTCATCCCAAAGCTTACGAGCCACAGTTGGTGTCTCTTGGGCCATACCATCATGGGAAACACCGTTTGCTTCCCATGGAGCGGGAGAAACAAAAAGGGTTTCTCCGTTTTAAATCTAAAAACAATCTGGACTTTGAATCCATTGTGGAAAGGGTGTCCAGCATTTTGGAACATCTTTTGGGATCCTACGATAAGCTCCAGGATATATGGAAGCTATATCCTGCCAAGTTCTTGGAGGTGATGATTGTGGATGCCTGTTTCCTGCTGGATTTCATTACTGAATGTCCACAATCCCTAAGCTCTATGATTTGGGATATAAAGCGAGACATGCTGTTGCTTGAGAATCAACTACCCATGAACCTTCTTAAACAACTGCATGCCATAAGAACCAATGAACAAAAGGATGTGATTGAGAAGATGAAGACAATATTGGAGTTGAACCCAGCGGACATGGACGCAAATTGTCAAAGCATCCCACCAGCAACACAACTTCGTAGAGCGGGGATAAAATTCGAGAAAAGCAGTACAAGTAGCCTTATGGACGTATCCTTCGACTGCGAACGGCGCATGCTGAGGCTGCCGTCTCTGGCGATCGACGACATCCTCACTGAACCCACCTTAATAAACATCATGGCATTTGAGAAACTGCATATTGGGGTTGGAAGCCAAGCCATTTCTTTCGTCATGTTGATGAAAAATCTAATAAGATTGGACAAAGATGTGTGGTTGTTGGCCTCCAAAGGAATACTTTCCAATGCAATTCATGACCGTGATGGTGTGGTACAGTTGTTCAATCGACTGGCCAAAGGACAGAACAAAAGTTTGGAGAGCCGCATGCATGACTTATTCAAGATATTGAATTGGTGTTGTAACAATCAGTGGACAATATGGTGGGCAAATCTCAAACTACCCCAAACTCAAAATCCATGGCCTGTCATCTACGGTGAGCAAAATGAAAGTAGAAATTTGGGAAGCAGTTTAAGAAGAAATACGAAGATGACGCAGCCACAGCTGCCCATCAGCATTAGTAGAAACGATAGTGCTCAGTTGGTGATTGAGGTGCAGGAAAATCTCAATAAACTGGGGAAATCAGTACTTGCTACGGACGAGAATACCTTCAATCGTTCGATCTACAGAATACCAACATTCATGAGAGAAGTTCATCCGAAAGCGTTCGAGCCACAGTTGGTGTCGTTTGGGCCATACCACCATGGGAAACCACAATATGCTTCAATGGAACTGGAAAAACAGAAAGCGTTTCGCCGTTTGAAAACCAACCCAGAGATGTTAGAGTCGATTGTGCAGACTGTGACTGACAATTTGCAAAACCTGTTGGGAGCATACGATAAGCTAATTGAGGGTGAATGGGCGAAACGTCCTGCCAAGTTCTTGGAGGTGTTGATTGTGGATGGCTGTTTCATGCTAAGTTTCCTCAAGAAATGTCCCCCCTCCCTAAGTTCTATGAGTTGGGATATAAAGCGGGACATGCTTCTGCTTGAGAATCAGCTACCCATGCTGCTTCTTGACGATTTGTATTCCATTTTACCAAACATGGATGGAAGACTGGCATGGTTTATATGCAAGTCAATGTGCTTCGCATCAGGGGAAGCAGTATCAATGGGAGGAAACTTGCACATTTTGGATATGTATAGAATGTCACTATTGGGTACTACGATATTAGAGAATAAGGATGGTAGTATGGAGAGAAAAACGAAGAAATCCGGGCCAGAATATCAAGTGATTCGACATGCAACACAGCTTCGTGACGCGGGGATAGATTTCCAGGAAAGCGGCACAAAGAGCCTTACTGACGTGAGTTTTGACTCCAAAAAAGGGGTGCTGAAAATTCCACAATTAGTGGTGGACGATGATAGTGAAGCCAGTTTATTAAATGTGATGGCATTTGAGAAACTACATGAGGAGGCTGGAAGCGAAGTCACATCTTTCGTAGTATTGATGAACAATTTGATAGACGTGGATGAAGATGTGGCTTTGCTGTCTTCTAAAAATATATTAGCTAACGCGCTTGGGGATGATCAAAGTGCGGCGGAGTTGTTTGGTTCGCTTGGGAAAGGGGCGGCTATGGATTTGGAAAGCCACATTACAGAGGTGCATCACCAGGTGAATCTGCATTGCCGCCGGCCATGGAATGAATGGTGTGCAAGTCTCAAACATAATTACTTTCATAACCCATGGGCCATTATCTCACTCGTTGCCGCTATTCTCGGTTTCGCCATCCTTATTGTTCAAGCCGTCTACCAAATTGTTGATTATTACCGAGGGAATTAA 2490 43.21 MENMKQSAIGSKLVDRNDIIIKDDMVALGIEVKERLSKLQESIGMEELSMQKNTKPSIYKIPEFMREVHPKAYEPQLVSLGPYHHGKHRLLPMEREKQKGFLRFKSKNNLDFESIVERVSSILEHLLGSYDKLQDIWKLYPAKFLEVMIVDACFLLDFITECPQSLSSMIWDIKRDMLLLENQLPMNLLKQLHAIRTNEQKDVIEKMKTILELNPADMDANCQSIPPATQLRRAGIKFEKSSTSSLMDVSFDCERRMLRLPSLAIDDILTEPTLINIMAFEKLHIGVGSQAISFVMLMKNLIRLDKDVWLLASKGILSNAIHDRDGVVQLFNRLAKGQNKSLESRMHDLFKILNWCCNNQWTIWWANLKLPQTQNPWPVIYGEQNESRNLGSSLRRNTKMTQPQLPISISRNDSAQLVIEVQENLNKLGKSVLATDENTFNRSIYRIPTFMREVHPKAFEPQLVSFGPYHHGKPQYASMELEKQKAFRRLKTNPEMLESIVQTVTDNLQNLLGAYDKLIEGEWAKRPAKFLEVLIVDGCFMLSFLKKCPPSLSSMSWDIKRDMLLLENQLPMLLLDDLYSILPNMDGRLAWFICKSMCFASGEAVSMGGNLHILDMYRMSLLGTTILENKDGSMERKTKKSGPEYQVIRHATQLRDAGIDFQESGTKSLTDVSFDSKKGVLKIPQLVVDDDSEASLLNVMAFEKLHEEAGSEVTSFVVLMNNLIDVDEDVALLSSKNILANALGDDQSAAELFGSLGKGAAMDLESHITEVHHQVNLHCRRPWNEWCASLKHNYFHNPWAIISLVAAILGFAILIVQAVYQIVDYYRGN 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1704924 1718007 - ClCG06G001660.1 Cla06g00150 274342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00150 829 Pfam Plant protein of unknown function 444 811 IPR004158 -
Cla06g00150 829 Pfam Plant protein of unknown function 221 380 IPR004158 -
Cla06g00150 829 Pfam Plant protein of unknown function 58 202 IPR004158 -
Cla06g00150 829 PANTHER PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED 39 200 IPR004158 -
Cla06g00150 829 PANTHER PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED 219 380 IPR004158 -
Cla06g00150 829 PANTHER EXPRESSED PROTEIN 39 200 - -
Cla06g00150 829 PANTHER EXPRESSED PROTEIN 407 827 - -
Cla06g00150 829 PANTHER EXPRESSED PROTEIN 219 380 - -
Cla06g00150 829 PANTHER PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED 407 827 IPR004158 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00150 - - - cmo:103499077 756.133
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00150 Cla-Chr6:1704924 Cla08g01316 Cla-Chr8:26077190 1.68E-10 dispersed
Cla09g00794 Cla-Chr9:8096408 Cla06g00150 Cla-Chr6:1704924 4.90E-06 dispersed
Cla06g00150 Cla-Chr6:1704924 Cla01g01665 Cla-Chr1:31545388 2.32E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1387 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00150 Cam06g0064 Cec06g0166 Cco06g0160 Clacu06g0161 Cmu06g0158 Cre06g0932 . . . . . . Chy11g01840 Cme11g02376 . . . . . . . . Sed09g0351 . . . . . . Cpe17g00949 . Bhi12g02379 Tan06g1430 Cmetu11g0377 . Hepe03g1179 . . . . . . . . . Lsi09g01778 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001248 0 1 0 0 0 1 6 2 2 4 1 2 2 2 4 8 1 0 5 1 3 1 1 5 2 4 2 10 3 0 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00150 Cla_Chr06 FPKM 9.634575 10.26409 13.480735 12.231256 9.825176 9.051776 8.775121 25.032419 26.444733 24.778133