Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00156 ATGAATGGAGATGTGAATGAATGGGTTAAATATGAGAATATCAAGCTACTAGAGGTGGATCGGCGGCATGGAAAGCGAGCACTTCCTTGGGAAGCACCGGAGGAGAAAGAAAGAGATCAAAATAATGAATTCCCTTCTTCTTGGTCCCAATCCAACTTCAATTATTCCCCCAATTTCAATCCACAAACACTAACTCAACTCCCTCAATCCGCCCCTCTTCAAAATCAAGAAACAGAAAGTGGGAGGAAGCGTCATTATAGAGGCGTAAGACAAAGACCATGGGGAAAATGGGCAGCGGAGATTCGTGACCCGAAGAAAGCGGCTAGAGTTTGGCTTGGAACTTTCGATACTGCCGAGGCTGCTGCCATTGCTTATGATAACGCCGCTTTGAGATTTAAAGGAACCAAAGCCAAGCTTAATTTCCCTGAACGAGTTCAAGCCAATCCTTCTGACTTTGGCTTTCTTCCCTCCGCCGCCTCCACCGCTGCTTCTTCTGCTGCTCCACCTCCCCAAGCCGCCGTGGCTTCATTTTCATCTCCTTCTCTTTCTCTTCCGCCGCCGTTGTCGGAGGAAGAAGCTTTCCCTGGACTTCATCAGTACGCTCAACTTCTCTCTAGCACCGACGCTGATTTCCCTTATTATTCTTCCACTCTTCTTCTCAACCAACAACAAACCCATTACCCTTTTTCTTCTTCTTCTTCTACACAACCACACCAACAAGATCAGGATCACTACGGCAAAGATTTCGGCACCGGTGGCTCAACCAATTAG 771 47.34 MNGDVNEWVKYENIKLLEVDRRHGKRALPWEAPEEKERDQNNEFPSSWSQSNFNYSPNFNPQTLTQLPQSAPLQNQETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNFPERVQANPSDFGFLPSAASTAASSAAPPPQAAVASFSSPSLSLPPPLSEEEAFPGLHQYAQLLSSTDADFPYYSSTLLLNQQQTHYPFSSSSSTQPHQQDQDHYGKDFGTGGSTN 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1743252 1751268 - ClCG06G001720.2 Cla06g00156 274348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00156 256 MobiDBLite consensus disorder prediction 225 256 - -
Cla06g00156 256 MobiDBLite consensus disorder prediction 161 185 - -
Cla06g00156 256 PANTHER DNA-BINDING DOMAIN 65 240 IPR044808 GO:0003700|GO:0009873
Cla06g00156 256 Gene3D AP2/ERF domain 84 144 IPR036955 GO:0003700|GO:0006355
Cla06g00156 256 Pfam AP2 domain 85 134 IPR001471 GO:0003700|GO:0006355
Cla06g00156 256 MobiDBLite consensus disorder prediction 25 89 - -
Cla06g00156 256 SUPERFAMILY DNA-binding domain 85 143 IPR016177 GO:0003677
Cla06g00156 256 PANTHER - 65 240 - -
Cla06g00156 256 CDD AP2 85 143 IPR001471 GO:0003700|GO:0006355
Cla06g00156 256 MobiDBLite consensus disorder prediction 25 42 - -
Cla06g00156 256 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Cla06g00156 256 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Cla06g00156 256 MobiDBLite consensus disorder prediction 225 240 - -
Cla06g00156 256 MobiDBLite consensus disorder prediction 43 77 - -
Cla06g00156 256 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Cla06g00156 256 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Cla06g00156 256 MobiDBLite consensus disorder prediction 161 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00156 - - - bhj:120067644 366.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00156 Cla-Chr6:1743252 Cla08g00268 Cla-Chr8:5730290 2.39E-30 dispersed
Cla06g00156 Cla-Chr6:1743252 Cla06g01787 Cla-Chr6:31286507 1.32E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1351 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00156 Cam06g0060 Cec06g0172 Cco06g0167 Clacu06g0166 Cmu06g0162 Cre06g0938 . . . . . . Chy11g01833 Cme11g02369 Blo02g00209 . . . Bpe14g00816 . . . Sed09g0340 . . . . . . . . Bhi12g02385 Tan06g1437 Cmetu11g1306 . Hepe03g1176 . . . . . . . . . Lsi09g01770 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003032 0 2 2 0 1 3 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 3 2 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61219 PF00847 AP2 9.90E-14 CL0081 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00156 Cla_Chr06 FPKM 6.03543 7.133538 11.152389 12.339501 7.608325 5.375575 7.260435 12.722995 11.775698 14.757386