Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00157 ATGCCGTCTGAAGTATTGGACTTGAAGGGTTTGTCTTCATCTTCCTTCTTCTCCGACGATTTACGTCATTCAGATGAGGGGCAGGTTGGAGTTTGGAAGTCAGCTAGTGTGCCAAATCACCGTGGGGTTCTAAAGAGGCATTTGGAAATTACTATGATATGGTATCTAGTTACAATGGAAGCCAGTAACATATCAGGTGCTTCATCATCTGTGGAAAAATTTTCAATAGGTGAGTGCCTGACAGAGAACTCACTGGAAAATCACGATTCATTTCCTGTGAGAGACCAGAATGCAAGTCTTATCCTGAATAGGCATGCCGTTGGAGCTGAAAGAACATCCAATTATTTTTCTCGAAGTAATGAAGTCAATATGATGAATTCTCAGTATGAGAGTAGTCTCTTCTCGAGTTCCTTATCAGATATATTTACTAGGAAGTTGCGTTTTTCTCCGAGCAATGCACTATATGGCCATTCTGTTGATACTGTTGCATCTCACTTTGAGGAGGAGGAAGTTTTTGAGTCACTTGAAGAATTGGAGGCCCAAACCATTGGAAACCTCCTCCCTGACGATGATGACTTACTTGCTGGTGTAACTGATGGGCTTGATTGTTTGGTTGAAACAACTGGCGAGGATGATGCTGAGGACTTGGATTTTTTTAGCAATGTTGGAGGGATGGATTTGGGTGATGATGGGTTATCTGTGGGGCAGAAGAATTCTGAATCTCCTGGAGGACTTTTTAACAATTTGCCAGGGTTGCATAATGGTGCTATGGCTGGAGAGCATCCTTTAGGCGAACATCCTTCCAGGACACTGTTTGTGAGAAACATTAATAGCAATGTTGAAGATTCTGAATTGAAGGTCCTTTTTGAGCAATATGGAGACATTCGCACTCTTTATACAGCATGCAAACATCGAGGGTTTGTTATGATATCCTATTATGATATTAGAGCTGCCCGTAATGCAATGAAAGCACTCCAGAATAAACCGTTGAGACGAAGGAAGCTCGACATACATTATTCTATACCAAAGGACAACCCTTCTGAAAAAGATATCAACCAAGGAACTCTGGTTGTTTTTAACCTTGAGTCTTCTGTTTCAAATGAAGAACTTCGTCAAATATTTGGTGTCTATGGAGAAATCAAGGAGATCCGTGAAGCCCCCCACAGAAGTCATCATAAGTTCATTGAATTTTATGATATCCGAGCTGCAGAGGCTGCTCTTTGTGCATTAAACCTGAGTGATATAGCTGGCAAGCAGATAAAGCTTGAGCCAAGTCGTCCTGGTGGTGTGAGACGCAGTTTGGTACAACAATTACATCCACAGTTGGAGGGGGGAGATATTGGTCTCTATTTGCAACAGGGTAGCCCTCCCGTTAACTGTAGTGCCGGATTCTCTGGCTTAGTTCCTAGTGGGACTATCAAGTCTAGCAGCCTGAGTAATGGATCTGTTCTTGGAGTACACTCTATGTTACGAGCTCCATCTCTGGAGACTGTGTTGCACCATGGGATATCTTCTAGCGTTCCTAGTAGCTTACCTTCTGTAATGAGATCTGAATCAACTGGCAACCAATCTGGCTTCATTGACTCTGGTCATTCACCTTCACAACTGAAGCTGGGTATCCGGGCATCTCCAGCTGTTCATCCTCATTCACTTCCAGAACACCCTGATGGTTTGAACAACAATGTTCATTGCAATTCTCTAAATACGATTGCAGGAAACATCAGTCTACGACCGCCCGAAAGAGCTGATAGCAGGCAGCTATGTGGAGTGAACTTTAATGGTCGCTCAATTGAATTGAATGAAGATGTTTTTGCATCTGGTGGTAACAGAACATGCCCCATTCCTGGACCTCATTATACATGGGGTAACTCCTACCGGCCCCAGCCTCCTGCTCCAGGTGTTGTATGGCCAAATTCTCCATCTTATATGAATGGAATTTCTGCTGCCCATACCCCGACCCAGGTCCATGGAGTTCCAAGAGCAGCATCTCATTTGATGCATACAGTTATGCCTATGAATAATCACCACGTTGGATCAGCACCAGCTGTTAATCCTTCTATTTGGGATAGACAACATGCTTATGCTGGGGAATTGTCAAAAGCTTCTGGTTTCCATTCAGGTTCTATAGGGAATATGAATTTATCTAACAATTCACCGCAGTCTATGGACTTTTTCTCTCATATCTTCCCACAAGTTGGTGGAAATTCTGTAGAGCTTCCTATCCCCCAACGGAATGTCGGGCTACAATCTCATCATCAGCGGTGCATGGTTTTTCCTGGACGGGGCCAAATTCTTCCAATGATGAATTCATTTGACTCTTCAAATGAACGTGGTAGAAGCCGAAGAAATGAAGCAGCCTCTAATCAAGCAGATAAGAAGCAATATGAACTTGATATTGATCGCATAATGAGGGGTGAAGACAATCGTACTACACTTATGATAAAGAACATACCTAACAAATATACCTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCATCGAGGAACTTATGACTTCATCTATCTGCCCATTGACTTTAAGAACAAATGTAATGTGGGATACGCGTTCATTAACATGACTGATCCTGGCCTAATCATTCCATTCTATGAGGCATTTAATGGGAAAAAATGGGAGAAATTCAATAGTGAGAAGGTGGCATCACTTGCATATGCCCGCATACAGGGAAAAGCTGCTCTCATCGCTCATTTCCAGAATTCAAGCTTAATGAATGAAGATAAGCGATGTCGACCAATTCTTTTCAACACTGATGGCCCCAATGCAGGTGATCAGGTTCCGTTTCCAATGGGGGTAAATGTTCGTACTAGGCCTGGAAAAACCCGAACCAATACCCAGGATGAAAATCCTGATGAAGGTCTAATAATTTCAGGAAATGGTGAGAATTATTCCAGTGGAGACGCATCTTCTTCATGTCTTGTAAAGGATTTGGAGCAGGCAGTACCATAA 2967 42.8 MPSEVLDLKGLSSSSFFSDDLRHSDEGQVGVWKSASVPNHRGVLKRHLEITMIWYLVTMEASNISGASSSVEKFSIGECLTENSLENHDSFPVRDQNASLILNRHAVGAERTSNYFSRSNEVNMMNSQYESSLFSSSLSDIFTRKLRFSPSNALYGHSVDTVASHFEEEEVFESLEELEAQTIGNLLPDDDDLLAGVTDGLDCLVETTGEDDAEDLDFFSNVGGMDLGDDGLSVGQKNSESPGGLFNNLPGLHNGAMAGEHPLGEHPSRTLFVRNINSNVEDSELKVLFEQYGDIRTLYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDINQGTLVVFNLESSVSNEELRQIFGVYGEIKEIREAPHRSHHKFIEFYDIRAAEAALCALNLSDIAGKQIKLEPSRPGGVRRSLVQQLHPQLEGGDIGLYLQQGSPPVNCSAGFSGLVPSGTIKSSSLSNGSVLGVHSMLRAPSLETVLHHGISSSVPSSLPSVMRSESTGNQSGFIDSGHSPSQLKLGIRASPAVHPHSLPEHPDGLNNNVHCNSLNTIAGNISLRPPERADSRQLCGVNFNGRSIELNEDVFASGGNRTCPIPGPHYTWGNSYRPQPPAPGVVWPNSPSYMNGISAAHTPTQVHGVPRAASHLMHTVMPMNNHHVGSAPAVNPSIWDRQHAYAGELSKASGFHSGSIGNMNLSNNSPQSMDFFSHIFPQVGGNSVELPIPQRNVGLQSHHQRCMVFPGRGQILPMMNSFDSSNERGRSRRNEAASNQADKKQYELDIDRIMRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFIYLPIDFKNKCNVGYAFINMTDPGLIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPMGVNVRTRPGKTRTNTQDENPDEGLIISGNGENYSSGDASSSCLVKDLEQAVP 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1762811 1771522 - ClCG06G001730.2 Cla06g00157 274349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00157 988 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Cla06g00157 988 CDD RRM2_MEI2_like 353 423 - -
Cla06g00157 988 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 974 - -
Cla06g00157 988 MobiDBLite consensus disorder prediction 507 531 - -
Cla06g00157 988 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Cla06g00157 988 Gene3D - 259 352 IPR012677 -
Cla06g00157 988 MobiDBLite consensus disorder prediction 775 791 - -
Cla06g00157 988 PANTHER PROTEIN MEI2-LIKE 4 2 974 - -
Cla06g00157 988 SUPERFAMILY RNA-binding domain, RBD 811 896 IPR035979 GO:0003676
Cla06g00157 988 SUPERFAMILY RNA-binding domain, RBD 266 429 IPR035979 GO:0003676
Cla06g00157 988 CDD RRM3_MEI2_like 812 897 IPR034454 -
Cla06g00157 988 MobiDBLite consensus disorder prediction 507 532 - -
Cla06g00157 988 CDD RRM1_MEI2_like 268 344 IPR034453 -
Cla06g00157 988 MobiDBLite consensus disorder prediction 954 977 - -
Cla06g00157 988 SMART rrm1_1 270 338 IPR000504 GO:0003723
Cla06g00157 988 SMART rrm1_1 811 887 IPR000504 GO:0003723
Cla06g00157 988 SMART rrm1_1 355 423 IPR000504 GO:0003723
Cla06g00157 988 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
Cla06g00157 988 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 421 IPR000504 GO:0003723
Cla06g00157 988 MobiDBLite consensus disorder prediction 939 977 - -
Cla06g00157 988 Gene3D - 353 441 IPR012677 -
Cla06g00157 988 MobiDBLite consensus disorder prediction 768 791 - -
Cla06g00157 988 Pfam RNA recognition motif 2 809 905 IPR007201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00157 - - - csv:101222875 1854.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00157 Cla-Chr6:1762811 Cla09g02181 Cla-Chr9:39444144 0 dispersed
Cla06g00157 Cla-Chr6:1762811 Cla05g02618 Cla-Chr5:37393069 1.65E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1348 Blo01g00156 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00157 Cam06g0059 Cec06g0173 Cco06g0168 Clacu06g0167 Cmu06g0163 Cre06g0939 Cone14ag0649 Cone15ag0659 . . . . Chy11g01832 Cme11g02368 . . . . . . . . Sed09g0339 . . . . . . Cpe17g00944 . Bhi12g02387 Tan06g1439 Cmetu11g1451 . Hepe03g1175 . . . . . . . . . Lsi09g01769 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003734 3 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00157 Cla_Chr06 FPKM 126.394592 141.161713 119.95932 125.985077 235.742172 242.750565 238.300262 247.285599 270.155334 243.100388