Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00162 ATGGTTCCTCCTACTTATGCTCCTCCTCCTTCCTTTCCTTTTAATCTCTTCTCTCCAAGTTTTGCTCTCATGAGTCATTTTGAGGGTTGTCATAATAATAATAATACTAACCATAATTCTCATGATCATCATCATCATCTCTTTCCTCTTCAAGATGATTCAACAACAACCAACCAAAACCCTTCTACTTCTAAGGATCTAACTCTTCATGACTCCGCCACCGCCACTGATAAGGGTTGGCTTCGTCTTAGCATCGGTACTGCCACCCCTGATGTCGTCGTTAACCACAACAAACACCACCACCATCATCAACAACCGCCAGGGTTTAGCTTTGGCTTGACCGAGCTCGATTTATTACCCTCTGACAGTGGCGTTGTCAGTTCGAAATTGAACGAGTCGTCGTTGGGGGTCGTTGGAGATTTTTCTACAACACCGGCTTTGGTTTTGCCTCCGCCGCCACCGGAGCTTAATTGGACGTTTAGACCTATCTCCTCTTATAACCCTTCCTCTTCTAATTGTTCTTCTTCTTTTATTCCATTTGGTCCTTACTTTTCAACTCCCTTTCAACTCCACCCTGGACTTGACTTAGTTGCTGCCACCACTGCCGCCGGATCCAGCTCCGACACGGTTAGGGTTATCGACCCTCCTCGCCGCCCTCATTCCGGGATTTGGTTTTCTCTTCAACCTTTGGAATTAAACCAAGGAAAACAACCAGTGTTGCCTCAAAGATCCAGCTACTTGCGAATCAAGGATGGAAAGATGACAGTTCGATTACTAATCAAGTACTTGATGAAAAAGCTCAGACTGGATAACGAATTAGAGATCGAGATAAGATGCAAAGGGGAAAAGCTTGAACCTTGCTTGACAATGCAGCATATTAGAGATACAATTTGGTGCTCCAAAGACTCAGCTCTTACCACTTTGCTTCCAAATTCCTCAACTATTGATCACATTATGGTTCTTCACTATGCCATAATTCCTCCTACCCCTAATTCTCCTTCTCCTTCTTAA 1011 44.11 MVPPTYAPPPSFPFNLFSPSFALMSHFEGCHNNNNTNHNSHDHHHHLFPLQDDSTTTNQNPSTSKDLTLHDSATATDKGWLRLSIGTATPDVVVNHNKHHHHHQQPPGFSFGLTELDLLPSDSGVVSSKLNESSLGVVGDFSTTPALVLPPPPPELNWTFRPISSYNPSSSNCSSSFIPFGPYFSTPFQLHPGLDLVAATTAAGSSSDTVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPQRSSYLRIKDGKMTVRLLIKYLMKKLRLDNELEIEIRCKGEKLEPCLTMQHIRDTIWCSKDSALTTLLPNSSTIDHIMVLHYAIIPPTPNSPSPS 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1828593 1834393 - ClCG06G001790.1 Cla06g00162 274354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00162 336 PANTHER RING FINGER PROTEIN 50 324 IPR044171 GO:0007275
Cla06g00162 336 Gene3D - 216 325 - -
Cla06g00162 336 PANTHER RING FINGER PROTEIN 50 324 - -
Cla06g00162 336 MobiDBLite consensus disorder prediction 51 68 - -
Cla06g00162 336 MobiDBLite consensus disorder prediction 35 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00162 - - - csv:101204945 494.197
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00162 Cla-Chr6:1828593 Cla07g01120 Cla-Chr7:28035732 6.04E-51 dispersed
Cla06g00162 Cla-Chr6:1828593 Cla02g01643 Cla-Chr2:31226943 5.10E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1339 . . . . Bpe13g00826 . . . . . . . . . . . . . . . . . . . Cla06g00162 Cam06g0051 Cec06g0181 Cco06g0174 Clacu06g0175 Cmu06g0170 Cre06g0944 . . . . . . Chy11g01826 Cme11g02361 Blo02g00204 . . . . . . Bma06g01330 Sed09g0330 . . . . . . . . Bhi12g02396 Tan06g1449 Cmetu11g2046 . Hepe03g1165 . . . . . . . . . . . Chy07g01536 Cme07g01979
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002377 1 2 1 2 1 2 3 2 2 2 2 2 4 2 2 4 2 0 3 2 2 2 2 2 2 2 2 3 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00162 Cla_Chr06 FPKM 3.451174 3.270021 5.488846 4.534175 5.535076 5.409679 6.496614 4.364098 3.266154 5.004566