Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00164 ATGAAATCTCCCGATATGGCGGCGGTTACTGATTCTCTTGAGCAGTCTTTCCGTAACTTCACCCTCAACCACCGTCTAGCCTCGGCTGCCCCTTCCTCCGCCGGAGTTCGGAGGTCTCCGTCGTCGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCGACGACGATGACGAATCTCATCTTCCTCTTCAACATAATCGCTTCGACACAATCTTGGAGCTCAACTCTCACATCTCCCTCCCTCCTTTCTGGGAACAATGCCTCGATTTGAAGACAGGGGAAGTCTACTACAGAAACTGCCGGACTGGAATGAGAGTAAAGGAAGATCCAAGGACAGTGGAAGCACACAGCCGAGATTTATACTCAGAAGACGAAGACGACGACGATGATGAGACCTCGTCGGATGGTGGAAGTGAGGAGTCGTGTTCTTCATCGTCGTACGGTGGTAGTAGACAGCAATACCCGGCGGAAAACGTGGAGGATGTGCTGGTGGTGGCCGGATGCAAGAGATGCTTCATGTATTTCATGGTGCCGAAACAGGTCGAAGATTGCCCCAAATGCAGCAGCAGTCGTCTTGTTCATTTCGATCGCTCCGACGACAATAATGGCTTTCCATGA 615 50.73 MKSPDMAAVTDSLEQSFRNFTLNHRLASAAPSSAGVRRSPSSFSSSSSSSSSDDDDESHLPLQHNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRTVEAHSRDLYSEDEDDDDDETSSDGGSEESCSSSSYGGSRQQYPAENVEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSDDNNGFP 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1872802 1874086 - ClCG06G001810.1 Cla06g00164 274356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00164 204 MobiDBLite consensus disorder prediction 136 152 - -
Cla06g00164 204 MobiDBLite consensus disorder prediction 120 135 - -
Cla06g00164 204 SUPERFAMILY WW domain 75 111 IPR036020 GO:0005515
Cla06g00164 204 MobiDBLite consensus disorder prediction 28 61 - -
Cla06g00164 204 PANTHER BOMB/KIRA PROTEINS 48 198 - -
Cla06g00164 204 MobiDBLite consensus disorder prediction 28 51 - -
Cla06g00164 204 PANTHER BNAC03G58250D PROTEIN 48 198 - -
Cla06g00164 204 MobiDBLite consensus disorder prediction 108 153 - -
Cla06g00164 204 Gene3D - 78 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00164 - - - csv:101221916 290.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00164 Cla-Chr6:1872802 Cla07g01114 Cla-Chr7:27914668 4.26E-34 dispersed
Cla06g00164 Cla-Chr6:1872802 Cla10g01766 Cla-Chr10:33590598 6.97E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1329 Blo01g00160 . . Bda11g00377 Bpe13g00824 . . . . . . . . . . . . . . . . . . . Cla06g00164 Cam06g0049 Cec06g0183 Cco06g0176 Clacu06g0177 Cmu06g0172 Cre06g0946 . . . . . . Chy11g01824 Cme11g02359 . Blo12g00291 . Bda11g00377 . . . Bma06g01333 Sed07g0129 . . . . . . Cpe17g00937 . Bhi12g02398 Tan06g1452 Cmetu11g1288 . . . . . . . . . . . Lsi09g01761 . Chy07g01527 Cme07g01971
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001835 4 2 2 3 3 2 4 2 2 2 2 2 2 2 2 3 2 2 4 2 2 2 2 2 2 2 2 2 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00164 Cla_Chr06 FPKM 10.283117 11.626806 13.36707 12.202566 7.17473 4.691809 7.012776 13.643693 13.986963 13.587919