Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00166 ATGGCCAGTTTCAAAGATTTAGTTTTCTTCCTCTCATTTGCTTCATTCATTGCTGCAGTCGTCTCTAACTCAGAAGGGGATGCTCTTGCTGCATGGAAAGCAGAACTGCTTGATCCAAACAATGTCCTTCAAAGTTGGGACCCCAGTCTTGTAAATCCATGCACTTGGTTCCACATCACTTGTGACAGTGATAACACTGTCGTCAGGGTGGATCTTGGCAATGCGAATCTCTCCGGACCCCTGATTCCCGAACTCGCCAAGTTACCAAATCTTCAATATTTGATGGTATATGACAATAATTTGAGTGGTTCAATTCCAAGGGAGATAGGGTTATTAACAAATCTGAAAAGTTTGTTTCTTTACAATAACAACTTCACTGGGCCTTTACCACCTTCCTTGGGAAATTTGAGCTCTCTGTTATTCTTTGAAGCACAAGGCAACAGTTTTAGTGGAATGATTCCAGCATCATTTGGGGCCTTGACATCTTTGAAGACCTTGAGATTAGATAATAACAATCTTAGTGGCATCATCCCTTTCACTCTTCTACAACTGGTTGACTTTGCCAATCTTCAGCTTCTGAATGTTTCACTAAACTCGTTTACCGGGACGGTTCGCCCGACTAATTCATCAGGGGACGCTTTGTATGCCTTGAGGAGATCAGTGAAAGATCCAAACAATGTCTTACAAAGCTGGGATCCAACTCTTGTTGATCCTTGTACTTGGTTCCATGTCACTTGTGACTCTTCTAACCGCGTCACTCGCCTTGATCTTGGAAATGCAAAGCTATCGGGCAACTTAGTTCCTGAGTTGGGGAATCTTGAGCACCTTCAATATTTAGAATTGTACATGAATCAATTGGTGGGTCCCATTCCAAAGGAGATCGGACGGTTGAAAAGCCTCATCAGCTTAGATCTCTACCACAACAACCTCACTGGCCCCATTCCTTCTTCCATCAAAAACCTCTCCAATCTCAACTTCCTGAGATTGAATGGGAATAGGCTCAGTGGAAGAATACCAAGGCAACTCACCAAACTTGGCAACCTAAAAATCATTGATGTGTCAGATAACGATCTGTGCGGGACGATCCCGACATCAGGCTCCTTCTCCAAGTTCTCGGAGGAAAGTTTCAAGAACAACCCGAGATTGGAAGGGCCAGAACTAATGGGGGAGTCAAGACAGCCTGGGAAGTAG 1191 44.0 MASFKDLVFFLSFASFIAAVVSNSEGDALAAWKAELLDPNNVLQSWDPSLVNPCTWFHITCDSDNTVVRVDLGNANLSGPLIPELAKLPNLQYLMVYDNNLSGSIPREIGLLTNLKSLFLYNNNFTGPLPPSLGNLSSLLFFEAQGNSFSGMIPASFGALTSLKTLRLDNNNLSGIIPFTLLQLVDFANLQLLNVSLNSFTGTVRPTNSSGDALYALRRSVKDPNNVLQSWDPTLVDPCTWFHVTCDSSNRVTRLDLGNAKLSGNLVPELGNLEHLQYLELYMNQLVGPIPKEIGRLKSLISLDLYHNNLTGPIPSSIKNLSNLNFLRLNGNRLSGRIPRQLTKLGNLKIIDVSDNDLCGTIPTSGSFSKFSEESFKNNPRLEGPELMGESRQPGK 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1892684 1905177 + ClCG06G001830.1 Cla06g00166 274358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00166 396 MobiDBLite consensus disorder prediction 370 396 - -
Cla06g00166 396 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515
Cla06g00166 396 Pfam Leucine Rich Repeat 114 136 IPR001611 GO:0005515
Cla06g00166 396 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 207 392 - -
Cla06g00166 396 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 120 204 - -
Cla06g00166 396 PANTHER LRR AMINO-TERMINAL DOMAIN PROTEIN 207 392 - -
Cla06g00166 396 PANTHER LRR AMINO-TERMINAL DOMAIN PROTEIN 120 204 - -
Cla06g00166 396 PANTHER LRR AMINO-TERMINAL DOMAIN PROTEIN 8 179 - -
Cla06g00166 396 Gene3D Ribonuclease Inhibitor 206 391 IPR032675 -
Cla06g00166 396 Gene3D Ribonuclease Inhibitor 21 186 IPR032675 -
Cla06g00166 396 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Cla06g00166 396 Pfam Leucine rich repeat N-terminal domain 208 247 IPR013210 -
Cla06g00166 396 SUPERFAMILY L domain-like 51 381 - -
Cla06g00166 396 ProSiteProfiles Leucine-rich repeat profile. 162 183 IPR001611 GO:0005515
Cla06g00166 396 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 8 179 - -
Cla06g00166 396 SMART LRR_typ_2 273 297 IPR003591 -
Cla06g00166 396 SMART LRR_typ_2 88 111 IPR003591 -
Cla06g00166 396 SMART LRR_typ_2 160 183 IPR003591 -
Cla06g00166 396 SMART LRR_typ_2 112 136 IPR003591 -
Cla06g00166 396 SMART LRR_typ_2 321 345 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00166 - - - csv:101204454 347.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00672 Cla-Chr2:7703190 Cla06g00166 Cla-Chr6:1892684 6.89E-57 dispersed
Cla03g01350 Cla-Chr3:28940577 Cla06g00166 Cla-Chr6:1892684 6.84E-57 dispersed
Cla06g00166 Cla-Chr6:1892684 Cla10g00875 Cla-Chr10:20028784 3.17E-61 dispersed
Cla06g00166 Cla-Chr6:1892684 Cla01g02278 Cla-Chr1:36660917 1.87E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1324 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00166 Cam06g0047 Cec06g0186 Cco06g0179 Clacu06g0181 Cmu06g0176 Cre06g0949 . . . . . . . Cme11g02356 . . . . . . . . Sed12g1621 . . . . . . . . Bhi12g02401 Tan06g1456 Cmetu11g1073 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000502 6 3 2 2 3 3 3 3 3 2 2 3 4 3 4 6 3 4 4 3 4 3 2 3 5 4 3 5 8 6 109
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00166 Cla_Chr06 FPKM 1.422996 1.583033 90.2612 87.454247 41.508678 40.262104 37.031696 97.699318 102.667496 96.921783