Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00167 ATGAAGACTTCTTTGAGGAAGTTGAGGGGTTTTGGACTGCATAAGCACGAACCTAAGGACCGTGTAGATCTTCGTCCTTTGGCTCAATTGGATGAGCTTGCTCAGGCTTCTCGGGACATGGATGAAATGAGAGACTGTTATGATAGCTTACTTTCTGCAGCTGCCGCTACAGAAAATAGTGCTTACGATCTAAAGATCTCTAACACCGTTGGCATAACTGATTCTGCAATTTCATCATCTAATTGTGGTTCTTATGCCTTATTTTTAGAATTCTCAGTCTCATTACAAGAAATGGGTGCATGCCTTCTTGAGAAAACTGCCCTGAATGATGATGAAGATAGTGGTAAGGTTCTGCTAATGCTGGGAAAGGTGCAATTTGAGCTCCAGAAACTTGTTGATCGATATCGCTCTCATATTTCACAAACCATAACACGCCCATCTGAATCTCTTCTGAATCAACTTCGAACAGTTGAGGAGATGAAAAGGCAATGTGATGAGAAAAGAGAAGTATATGAATACATGAGACAGAGGCACAAGGAGAAGGGGAGGTCAAAAACTGTCAAGGGAGAGAGCTTTACATTGCAACAGTTGCAAACAGCCCGAGAAGAATATGATGATGAGGCAACATTATTTGTTTTCCGGTTGAAATCTTTGAAGCAAGGACAGTGTCATAGTCTTCTCACACAGGCTGCACGTCATCATGCTGCTCAGCTGTGTTTCTTCAAGAAGGCACTTCAATCTCTTGAAGCAGTGGAACCACATGTAAAATCGCTGACAGAGCAGCAGCACATAGATTACCGGTTCAGTGGACTGGAAGATGACAACATGGATGATGGACATCAAGATAGTGTCGATGATGATGATGACGACTATGATGAGGGTGATGATGGGGAATTAAGTTTTGATTATGCGCAAAATGATCATGATCAAGCTATTTCAACATTACAGAAATCTGAGTTGGACCAGCCAGATCTTGCATTTCATCATGTGGAAGCTCTGAAGGAAAATCTGGACAGAAATCGTAGGAATTCTTTTTCCTTTGGTGGTAGAACAGTAAGCCAGTCTGCTCCACTTTTTCCTGATAAAAAATTTGATGCTGCTGAAAGAATAAGACAGATGCGTCCTTCATCAACTCGGAAGTTCCATACATATGTTCTACCCACCCCAGCTGATACAAAGGGTTTAATTTCTGGGGTTCCTGGAAATTCCGTGCCTAACACCATGCAGACAATACGTCAGCAAAATTTATTGCGGCACTCGTCACCATTGGAACCAAGGAAGTACGACAAGTTAGTGGGAGATGAGAATATGTCGGGACATGGTGCTGCAAAGGCGCAGTCTGTACTCAAGGAGAGTAACACTAACACATCAGCCACTGAGTTACCTCCTCCTCTGTCTGATGCTTTGCCACGGCACAGTTTAGCTGCTGCTTCTGATGCTAAAAAAATTAAGAGACTAGCCTTTTCGGGCCCTTTAATAGGTAAGCCATCGACTAACAAGCCCGTTCCAGTTGAAAACCCTCAGTTGTTTTCGGGACCTCTCTTACGAAATCCAATACCACAACCTTTGTCATCATCACCAAAAGTGTCCCCAGCTGCTTCCCCTACTTTTATTTCCTCACCTAAAATCAATGAGCTACATGAGCTTCCTAGGCCTCCTATTAGTTCAACGTATAAGTCGTCAAGACCTTCAGGTTTAATTGGTCACTCAGCTCCTTTGGTATCAAAAAGTCAAGGACAATCTGCTGCAACGAAAACTGTTGTAAGGAGTACGGCGTCTCCATTGCCAATGCCTCCTCTCCAAACTATCACACGCAGTTTCTCCATTCCGTCCAGGAGTCCTAGGGAGACAGAGACCTTATTTCACGAGCCGAAACCTTTGGAAACCGTTGGATCTGCTGAAATGGTATTAGACACATCTTCACCTCCCTTGTCACCACTTACCTTATCTAACAACCAGAGTCATACATCAACAGGTTCAGAGAATGGTCCTGCAGTTAAAGTTGAGATGGATATTGACATAATGAGGGTGGGAACGAGATCCATTGGAACCACTGTAGAGAAAAAGAAAGAGACCAGAGCAAATTTAGTAATCAATGCAGGGTTTGAGGTTGAGAAGATTTTCATTGAGGTGGTCATGGGCAATGTGCAGATTGAGGAACCATTATGCGGAGATTATAGTCTGTCGATCGCAGAAAAACCGGTCGGGGCCAAAGGTAGTTGCTTCCAACCATGA 2235 43.49 MKTSLRKLRGFGLHKHEPKDRVDLRPLAQLDELAQASRDMDEMRDCYDSLLSAAAATENSAYDLKISNTVGITDSAISSSNCGSYALFLEFSVSLQEMGACLLEKTALNDDEDSGKVLLMLGKVQFELQKLVDRYRSHISQTITRPSESLLNQLRTVEEMKRQCDEKREVYEYMRQRHKEKGRSKTVKGESFTLQQLQTAREEYDDEATLFVFRLKSLKQGQCHSLLTQAARHHAAQLCFFKKALQSLEAVEPHVKSLTEQQHIDYRFSGLEDDNMDDGHQDSVDDDDDDYDEGDDGELSFDYAQNDHDQAISTLQKSELDQPDLAFHHVEALKENLDRNRRNSFSFGGRTVSQSAPLFPDKKFDAAERIRQMRPSSTRKFHTYVLPTPADTKGLISGVPGNSVPNTMQTIRQQNLLRHSSPLEPRKYDKLVGDENMSGHGAAKAQSVLKESNTNTSATELPPPLSDALPRHSLAAASDAKKIKRLAFSGPLIGKPSTNKPVPVENPQLFSGPLLRNPIPQPLSSSPKVSPAASPTFISSPKINELHELPRPPISSTYKSSRPSGLIGHSAPLVSKSQGQSAATKTVVRSTASPLPMPPLQTITRSFSIPSRSPRETETLFHEPKPLETVGSAEMVLDTSSPPLSPLTLSNNQSHTSTGSENGPAVKVEMDIDIMRVGTRSIGTTVEKKKETRANLVINAGFEVEKIFIEVVMGNVQIEEPLCGDYSLSIAEKPVGAKGSCFQP 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1905457 1912691 - ClCG06G001840.2 Cla06g00167 274359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00167 744 SUPERFAMILY BAR/IMD domain-like 31 259 IPR027267 -
Cla06g00167 744 MobiDBLite consensus disorder prediction 490 565 - -
Cla06g00167 744 Gene3D Arfaptin homology (AH) domain/BAR domain 29 281 IPR027267 -
Cla06g00167 744 PANTHER BNAA05G10100D PROTEIN 1 65 - -
Cla06g00167 744 PANTHER BNAA05G10100D PROTEIN 89 658 - -
Cla06g00167 744 MobiDBLite consensus disorder prediction 640 664 - -
Cla06g00167 744 CDD BAR 39 254 - -
Cla06g00167 744 MobiDBLite consensus disorder prediction 447 462 - -
Cla06g00167 744 MobiDBLite consensus disorder prediction 640 663 - -
Cla06g00167 744 MobiDBLite consensus disorder prediction 270 300 - -
Cla06g00167 744 MobiDBLite consensus disorder prediction 278 300 - -
Cla06g00167 744 Coils Coil 157 177 - -
Cla06g00167 744 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 89 658 IPR037488 -
Cla06g00167 744 MobiDBLite consensus disorder prediction 518 541 - -
Cla06g00167 744 MobiDBLite consensus disorder prediction 434 469 - -
Cla06g00167 744 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 65 IPR037488 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00167 - - - bhj:120092875 1159.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1323 Blo01g00161 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00167 Cam06g0045 Cec06g0187 Cco06g0180 Clacu06g0182 Cmu06g0177 Cre06g0950 . . . . . . Chy11g01821 Cme11g02355 . . . . . . . . . . . . . . . Cpe17g00934 . Bhi12g02403 Tan06g1458 . . . . . . . . . . . . Lsi09g01757 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003357 3 3 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00167 Cla_Chr06 FPKM 1.064079 1.101127 76.567131 76.711342 29.161455 24.130033 27.151554 57.992256 56.012814 62.607338