Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00168 ATGTTACCTACTCCACTGGATTTACACACCCAAACTCGCCGTGGCCTTGCCTCACAGTGGTGGTGGCGTGCCGTCTTCAAACCCCTCCATTTCCCCCAAATCTCCCGTCTGATCGGATCCAACCCTTTCCAGCGATCTAACTCCATAAACGCTGGTCAGAGCAATCTTTCGCTCGAGAAAAAGATGTGGGGAATCGTTCGGCAAAAAGTTGGCGCTGGAGCCTCCTCTATTCCGGCTTTGCAGAGGCTTCGTCCAGCCGCCTCATCATCGAGATATTCATCTGCCGCAAAAGAGATGACTGTGAGAGATGCTCTAAACTCTGCACTTGATGAAGAAATGTCCGCTGATCCTAAAGTTTTTTTGATGGGTGAAGAGGTTGGAGAATATCAGGGTGCCTATAAGATAACCAAAGGGCTTTTGGAGAAATATGGTCCCGAGAGGGTTCTTGATACCCCAATCACAGAGGCTGGGTTTGCTGGTATTGGTGTTGGCGCTGCTTACCATGGTCTGAAGCCTGTTGTGGAGTTTATGACATTTAATTTCTCCATGCAGGCCATTGATCATATCATTAATTCTGCGGCAAAAACGAATTATATGTCAGCTGGCCAAATTTCCGTGCCAATTGTCTTTAGAGGGCCTAACGGTGCAGCTGCTGGAGTTGGTGCCCAGCACTCCCAGTGTTATGCAGCATGGTATGGGTCCTGCCCTGGCTTGAAGGTTTTGGCCCCATATTCATCTGAAGATGCACGTGGGCTTTTAAAAGCTGCTATAAGGGATCCAGATCCTGTGGTGTTTCTTGAAAATGAGTTATTATATGGTGAATCATTCCCTGTTTCAGCAGAGGTCCTTGATTCCAGTTTCACCGCTCCCATAGGAAAAGCTAAGATTGAGAGAGAAGGGAAGGATGTGACTATTACTGCTTTTTCGAAGATGGTGGGCTATGCACTTAAGGCAGCTGAATTACTTTCCAAAGAAGGAATTAGTGCTGAGGTTATTAACCTGCGCTCTATTAGGCCACTAGACAGAGCCACGATCAACGCTTCAGTTAGGAAGACCAATAGATTAGTAACAGTTGAAGAAGGGTTTCCTCAGCATGGGGTTGGAGCTGAGATCTGCACATCTGTCGTTGAGGAAAGTTTTGGCTATCTTGACGCGCCAGTGGAGAGGATTGCAGGGGCTGACATTCCCATGCCTTATGCAGCCAATCTTGAAAGGATGGCTGTCCCTCAGGTTGAGGACATCGTTCGAGCAGCAAAAAGAGCATGCTACAGAGCCGTACCATTGGCAGCAACTGGTTAA 1299 47.81 MLPTPLDLHTQTRRGLASQWWWRAVFKPLHFPQISRLIGSNPFQRSNSINAGQSNLSLEKKMWGIVRQKVGAGASSIPALQRLRPAASSSRYSSAAKEMTVRDALNSALDEEMSADPKVFLMGEEVGEYQGAYKITKGLLEKYGPERVLDTPITEAGFAGIGVGAAYHGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFTAPIGKAKIEREGKDVTITAFSKMVGYALKAAELLSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTVEEGFPQHGVGAEICTSVVEESFGYLDAPVERIAGADIPMPYAANLERMAVPQVEDIVRAAKRACYRAVPLAATG 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1924255 1929473 - ClCG06G001850.2 Cla06g00168 274360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00168 432 SUPERFAMILY TK C-terminal domain-like 287 421 IPR009014 GO:0003824
Cla06g00168 432 Pfam Transketolase, C-terminal domain 292 414 IPR033248 -
Cla06g00168 432 CDD TPP_PYR_E1-PDHc-beta_like 103 269 - -
Cla06g00168 432 Gene3D - 98 290 - -
Cla06g00168 432 Pfam Transketolase, pyrimidine binding domain 98 273 IPR005475 -
Cla06g00168 432 PANTHER DEHYDROGENASE RELATED 66 427 IPR027110 GO:0004739|GO:0006086
Cla06g00168 432 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 97 278 IPR029061 -
Cla06g00168 432 SMART Transket_pyr_3 99 274 IPR005475 -
Cla06g00168 432 Gene3D - 291 423 IPR009014 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00168 K00162 PDHB, pdhB; pyruvate dehydrogenase E1 component beta subunit [EC:1.2.4.1] - csv:101220981 710.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00635 Cla-Chr3:7565870 Cla06g00168 Cla-Chr6:1924255 9.16E-88 dispersed
Cla03g01407 Cla-Chr3:29572155 Cla06g00168 Cla-Chr6:1924255 1.21E-62 dispersed
Cla06g00168 Cla-Chr6:1924255 Cla10g00744 Cla-Chr10:12591817 1.34E-10 dispersed
Cla06g00168 Cla-Chr6:1924255 Cla10g00743 Cla-Chr10:12492774 6.68E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1321 Blo01g00162 . . Bda11g00379 . . . . . . . . . . . . . . . . . . . . Cla06g00168 Cam06g0044 Cec06g0188 Cco06g0181 Clacu06g0183 Cmu06g0178 Cre06g0951 . . . . . . Chy11g01820 Cme11g02354 . Blo12g00290 . Bda11g00379 . . . . Sed07g0124 . . . . . . Cpe17g00933 . Bhi12g02405 Tan06g1460 . . . . . . . . . . . . Lsi09g01756 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003819 3 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 2 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00168 Cla_Chr06 FPKM 7.100977 8.653843 19.306889 16.116444 11.840293 11.150992 12.117711 4.173347 4.28042 4.119771