Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00176 ATGGATTTGAATAGAGAGAAAGTGAAGAACAAGGGATTGATCTTGAAAACCTGGGAGCGGTGCAAGTCGATGGGCCGAGGGCGAAGAAATCCACCGTCCTCCGCCGGAATAAAACGATTCTTAACGAGGAAGACAAAATCCTTGCCTCGCCTGGAGGTCTTCTCCGGCGGAGAAGACGAGGACGAGAAGGAACGACGGCGGACCTTTGGCCAAAAGCGGAGAGTGGCGCCGGAAGGATGTTTCACGGTGTACGTCGGAGCGGAGAGGCAGAGATTTGTGATCAGAACAGAGTGTGCGAATCATCCTCTGTTCCGATCGCTTTTGGAGGAGGCAGAGGCGGAGTACGGATACAACTGCCAAGCGCCGCTATCGCTACCGTGCGATGTAGAGAGTTTTTACAGCGTGCTGATGGAGATGGACTACGACGGCGCCGCTGATCTCCGCCGTGGATGTGGATATCCTACTCCGAAGAGATTTGGATCTTATCATCTTCTCAGTCCCCGTTCTTCATCTCTCGTTGTAAATTAA 528 52.65 MDLNREKVKNKGLILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPRLEVFSGGEDEDEKERRRTFGQKRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQAPLSLPCDVESFYSVLMEMDYDGAADLRRGCGYPTPKRFGSYHLLSPRSSSLVVN 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2059456 2059983 + ClCG06G001920.1 Cla06g00176 274368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00176 175 PANTHER OS02G0305950 PROTEIN 10 143 - -
Cla06g00176 175 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 10 143 IPR003676 GO:0009733
Cla06g00176 175 Pfam Auxin responsive protein 69 136 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00176 K14488 SAUR; SAUR family protein - csv:101219164 318.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00176 Cla-Chr6:2059456 Cla02g00471 Cla-Chr2:4562111 6.71E-15 dispersed
Cla03g00371 Cla-Chr3:4271477 Cla06g00176 Cla-Chr6:2059456 3.17E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1310 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00176 Cam06g0035 Cec06g0195 Cco06g0190 Clacu06g0192 Cmu06g0186 Cre06g0958 . . . . . . Chy11g01813 Cme11g02346 . . . . . . . . Sed07g0116 . . . . . . Cpe17g00927 . Bhi12g02416 Tan06g1476 Cmetu11g1752 . Hepe03g1149 . . . . . . . . . Lsi09g01749 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004664 2 1 0 3 2 1 3 1 1 1 1 1 2 1 1 1 1 2 3 1 1 2 1 2 2 1 1 1 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00176 Cla_Chr06 FPKM 13.89538 15.067001 15.054023 16.019428 22.09774 23.579901 23.788761 16.552275 14.597561 15.338829