Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00178 ATGGCGGCTTCTTTTGCTACTACGCCTCTGGTTGGCTTCGTTTCTGCTTCCAATACCGTCTCGCAAACCAAAGCTTCAGGCCCGTCTAATTCGGTTAAGCTTCATACGCTTCAATTGCCTTCGAATCTTTCGTCCTCGTCCAGTTTTCTGCCCGCTTCGTTGCGTTTTCCTTCTCTGACAACTTCTTTTAATCCGTTGTCTTCGAGGAATGCTGTTCGTAGCTCCGTCCGAGCTAGTGCTGAGGTACCTCCTCTACAAGCCAAAGTAACAAACAAGGTATATTTCGATGTGAGCATTGGTAATCCAGTAGGGAAACTTGCTGGGAGGATTGTGATTGGATTATTTGGGGATGATGTCCCCAAAACGGCAGAGAACTTCCGTGCTCTTTGCACAGGAGAGAAGGGCTTTGGATTCAAAGGTTCTGCCTTTCATCGTGTAATCAGAGATTTCATGATACAAGGGGGTGACTTTGACAAGGGAAATGTACGCAGAACTGTGTCCAAGAATTTGAAGCTACATCAGAACAGTGTTAGCGCCTTCATGCATGTTACAGTCTATGTGTTCTACACTTCTAGTGTCCCCTTTACTCAACTCTGGAACATATTCTCCTTTGCAGTGAGTCATACTGGACCAGGAGTTGTCAGCATGGCAAATGCAGGTCCAAATACTAATGGAAGTCAATTTTTCATATGCACTGTCAAGACCCCATGGCTGGATCAGAGGCATGTGGTTTTTGGGCAAGTCCTGGAAGGATTCGACATTGTTAAGCTAATTGAGTCTCAAGAAACAGACCGTGGGGACCGACCATTGAAGAAGGTTGTCATCAGCGACTGTGGCGAGCTTCCAGTGGCCTGA 855 46.55 MAASFATTPLVGFVSASNTVSQTKASGPSNSVKLHTLQLPSNLSSSSSFLPASLRFPSLTTSFNPLSSRNAVRSSVRASAEVPPLQAKVTNKVYFDVSIGNPVGKLAGRIVIGLFGDDVPKTAENFRALCTGEKGFGFKGSAFHRVIRDFMIQGGDFDKGNVRRTVSKNLKLHQNSVSAFMHVTVYVFYTSSVPFTQLWNIFSFAVSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGFDIVKLIESQETDRGDRPLKKVVISDCGELPVA 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2077707 2083749 + ClCG06G001940.2 Cla06g00178 274370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00178 284 SUPERFAMILY Cyclophilin-like 83 281 IPR029000 -
Cla06g00178 284 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 107 279 IPR002130 GO:0000413|GO:0003755
Cla06g00178 284 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 138 155 IPR020892 GO:0003755|GO:0006457
Cla06g00178 284 Gene3D - 79 284 IPR029000 -
Cla06g00178 284 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 69 283 - -
Cla06g00178 284 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 155 IPR002130 GO:0000413|GO:0003755
Cla06g00178 284 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 212 227 IPR002130 GO:0000413|GO:0003755
Cla06g00178 284 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 227 239 IPR002130 GO:0000413|GO:0003755
Cla06g00178 284 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 240 255 IPR002130 GO:0000413|GO:0003755
Cla06g00178 284 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 129 IPR002130 GO:0000413|GO:0003755
Cla06g00178 284 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 104 280 IPR002130 GO:0000413|GO:0003755
Cla06g00178 284 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 69 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00178 K03768 PPIB, ppiB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] - csv:101218923 384.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00706 Cla-Chr1:8276746 Cla06g00178 Cla-Chr6:2077707 1.28E-48 dispersed
Cla02g01690 Cla-Chr2:31801570 Cla06g00178 Cla-Chr6:2077707 1.25E-21 dispersed
Cla04g01114 Cla-Chr4:26358610 Cla06g00178 Cla-Chr6:2077707 7.76E-14 dispersed
Cla06g00178 Cla-Chr6:2077707 Cla06g00937 Cla-Chr6:15744750 5.00E-53 dispersed
Cla06g00178 Cla-Chr6:2077707 Cla07g00393 Cla-Chr7:4869007 1.19E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1302 . . . . . . . Bma15g00278 . . . . . . . . . . . . . . . . Cla06g00178 Cam06g0033 Cec06g0197 Cco06g0192 Clacu06g0194 Cmu06g0188 Cre06g0960 . . . . Lsi04g00730 . Chy11g01811 Cme11g02344 Blo06g00788 Blo12g00285 . . . . . . Sed09g0360 . . . . . . . . Bhi12g02419 Tan06g1479 Cmetu11g1517 . Hepe03g1142 . . . . . . . . . Lsi09g01747 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009740 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00178 Cla_Chr06 FPKM 20.544939 21.327999 18.745514 20.354475 33.070484 36.11517 34.449879 17.328178 15.159246 15.434202