Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00185 ATGAGGAGAAGGAAAGATGAAGGGGTCAAGAAGGAGAAGATGGTGGGTCCGAGTTGGAAGGAGAGGAGAGATATAAAGGTGGGGTTATGGTCACGTGGAGGAGTTATAAGTGCAGAACTTGACAAGGAAGTCCCTGAATTAATAACAGTAAAGGGAGTTTTTGAAGTGAAAAAGCTTGTGGCCCACATCAGAAGGGGAGTCAATAAAATTGTCACCGTTATCAAAGAAGAAAGCGCCACCGCGGGCGGAGGGGAAGAAGAAAGAGAGACCCCCGGAGAAGAGGCTAGCGGCGGGGCTGCCACTGCCGGAGGAACTGATCACGAGAAAGAAGAAGGAGAAGGAGAAGGAGAGCCCACCGGAGAAGGGAGTAGCACTGCCGGAGGCACTGATCACGAGAAAGAAGAAGGAGAAAGAGAAGGAGAAGAAGGAGAAGGAGAGATAAAAGGTCAGAATCAAAATGGAAACAAGAAACAAGAAGAGAAGGGAGAGGGAAAGAAGGAAGAGCAGAGAAAGATAACAGAAGTTGTGCTTAAAGTTTATATGCATTGTGAAGCCTGCAAACACAAACTCTCAAAATGCTTGAATTCTTCTCACCATGGTGTGGAGGAAGTGACAGCTGATATGGGGAATCAAAAAGTGGTAATAAAAGGAAAAGACCTAAATCCAAAGAAAATATTGGAAGGAATTAGAAAAAAATACTCCAAAAATGTGGAGCTTATTTCTCCTAAAGAGCTGCCTGATGGTCCAAAGCAAAAGAAACCTGAACCTAAAAAGGAAGAGGCTCAGATGAAGACTGTGGAGCTAAAAATGAATATGCATTGTGAAGGCTGTGCAAGAGACATCGAGCAAACCATTGGAAAAATGGAAGGAGTAATGACAGTAGAAACAAATAAAGAGAGTTCAAAAGTGATAGTGAAGGGAATAATGGATCCTCCAAAGCTGGTGGAATGCATTAAAAAGAAAATGGGAACGAATGTAGAGATGTTCAATAAGAAACAAGAGAAACAAAGCCAACCTAATAAAGATGCAAATCAAGACAAACCAACCAACAAGAAGGATGCAAATCAAGACAATGAAAATTTTGTATTTAAATATCCTCCTCAATACTCTTTGCTTCACATTTACCCTAATCAAACTTTTAGTGATGATAATGTATTTTCTTGCTCTATTATGTAA 1176 41.16 MRRRKDEGVKKEKMVGPSWKERRDIKVGLWSRGGVISAELDKEVPELITVKGVFEVKKLVAHIRRGVNKIVTVIKEESATAGGGEEERETPGEEASGGAATAGGTDHEKEEGEGEGEPTGEGSSTAGGTDHEKEEGEREGEEGEGEIKGQNQNGNKKQEEKGEGKKEEQRKITEVVLKVYMHCEACKHKLSKCLNSSHHGVEEVTADMGNQKVVIKGKDLNPKKILEGIRKKYSKNVELISPKELPDGPKQKKPEPKKEEAQMKTVELKMNMHCEGCARDIEQTIGKMEGVMTVETNKESSKVIVKGIMDPPKLVECIKKKMGTNVEMFNKKQEKQSQPNKDANQDKPTNKKDANQDNENFVFKYPPQYSLLHIYPNQTFSDDNVFSCSIM 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2144079 2154018 - ClCG06G002010.2 Cla06g00185 274377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00185 391 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 8 149 391 - -
Cla06g00185 391 CDD HMA 272 323 IPR006121 GO:0046872
Cla06g00185 391 MobiDBLite consensus disorder prediction 334 358 - -
Cla06g00185 391 ProSiteProfiles Heavy-metal-associated domain profile. 271 320 IPR006121 GO:0046872
Cla06g00185 391 MobiDBLite consensus disorder prediction 78 169 - -
Cla06g00185 391 Gene3D - 260 329 - -
Cla06g00185 391 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 8 23 86 - -
Cla06g00185 391 Gene3D - 172 245 - -
Cla06g00185 391 MobiDBLite consensus disorder prediction 329 359 - -
Cla06g00185 391 ProSiteProfiles Heavy-metal-associated domain profile. 181 231 IPR006121 GO:0046872
Cla06g00185 391 MobiDBLite consensus disorder prediction 127 146 - -
Cla06g00185 391 MobiDBLite consensus disorder prediction 245 260 - -
Cla06g00185 391 SUPERFAMILY HMA, heavy metal-associated domain 262 326 IPR036163 GO:0046872
Cla06g00185 391 SUPERFAMILY HMA, heavy metal-associated domain 174 231 IPR036163 GO:0046872
Cla06g00185 391 CDD HMA 181 231 IPR006121 GO:0046872
Cla06g00185 391 Pfam Heavy-metal-associated domain 271 321 IPR006121 GO:0046872
Cla06g00185 391 Pfam Heavy-metal-associated domain 178 232 IPR006121 GO:0046872
Cla06g00185 391 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 23 86 IPR044577 GO:0046872
Cla06g00185 391 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 149 391 IPR044577 GO:0046872
Cla06g00185 391 MobiDBLite consensus disorder prediction 153 169 - -
Cla06g00185 391 MobiDBLite consensus disorder prediction 241 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00185 - - - csv:105435985 350.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00185 Cla-Chr6:2144079 Cla10g01911 Cla-Chr10:35008444 1.63E-12 dispersed
Cla03g00367 Cla-Chr3:4218961 Cla06g00185 Cla-Chr6:2144079 1.84E-37 wgd
Cla06g00185 Cla-Chr6:2144079 Cla06g01754 Cla-Chr6:31061136 6.96E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1297 Blo01g00171 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00185 Cam06g0026 Cec06g0203 Cco06g0198 Clacu06g0202 Cmu06g0195 Cre06g0968 . . . . . . Chy11g01805 Cme11g02338 . . . . . . . . Sed07g0107 . . . . . . . . Bhi12g02426 Tan06g1492 Cmetu11g2271 . Hepe03g1138 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012885 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00185 Cla_Chr06 FPKM 14.399125 16.563274 40.946434 40.717861 10.003868 9.961905 10.537269 129.011826 122.003395 127.625038