Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00190 ATGGCGTGGATTTGTGAGTGGCGTATTTCTATCTCTTTCGCGATGGATTCATCTGTCAAGTCGGTTTTGGTGGAATTCAGAGCCTCTGCCAATGCTTTCCTGTCCAACTACGAGCCACTGGCTCTCGTTTTTGGTCCTCTTTTGGTCCTACTATTGGCTCGGTTGCTTCAGTCATTTCTGGATCTTGTTTACGAAACAGGACTCAAAGCCACCTTCTTATCGTTTTTCATGGCTACGATTAAGTTAATTCCAGGGGTGAAACGTCGAATCGATTCTGAGAAGCAGAAGGTTGTGGATAAATTACAATCCAGCGGTAATTCTAAAAGAGAAAGTTGGAGGACTGAGTTGCCAATGGCAGGCCTAGGAACTGAAGTCATTGAGAAAATGAAAAATGAGAAACAAAATGATGTGGTTTGGCAAGGCAAATGTTCGGGTACAGTCTACATTGGAGGATCTGAATCTGAAGGTCATTTTTCTCTCATAAATGAGGCATATTCAATGTTCGCACATACAAATCCTCTGCATTTGGATGTATTTCAAAGTGTGGTGCGGTTTGAAGCTGAAGTAGTGGCCATGACTGCTGCTCTTCTTGGCAGTAAAGTGGAGGCTTCCGGAGGGAAAATCTGCGGAAACATGACATCGGGAGGAACTGAAAGCATACTATTGGCTGTGAAATCAACTCGTGACTATATGAAATCCAAGAAGGGAATTAGAAAACCTGAAATGATAATACCTGAGTCTGCACATTCAGCATATGATAAGGCTTCTCAATATTTTAATATCAAGCTGTGGCGTGTCCCTGTGGATAAAGAATTCAAAGCAGATGTCAAAGCTATTCGAAAATTTATCAACAGGAATACTATCTTGATCGTTGGATCTGCGCCTGGGTTTCCTCATGGAATCATTGATCCGATTGTTGAACTTGGGAAATTAGCTTCTAGCTTTGGTATTTGTCTGCATGTTGACTTTTGTCTTGGCGGCTTTGTGTTGCCATTTGCGCGTAAGCTTGGGTACCCAATTCCACCTTGTGATTTTTCAGTTAAAGGAGTGACATCAATATCTGTGGATGTACATAAATATGGATTAGCACCCAAAGGAACAAGCGTAGTTTTGTACAGAAATCATGAAATTAGAAAGCATCAATTTGTTGCTGTAAGTGAATGGTCTGGTGGCCTTTACGTCTCTCCAACAATAGCTGGAAGCAGACCTGGTGGCTTGATTGCTGGGGCTTGGGCAGCAATGATGTCTTTGGGAGAAGAAGGATATTTGCAGAACACAAAAGAGATCATGGAAGTATCAAAGAGGATACATAGAGGGATAAACGAGATTCCTGAGTTATTTGTCATTGGAAAGCCAGACATGACAATTATAGCATTTGGGTCTACTGTTATTGACATTTTTGAAGTCAATGACGTTATGTCATCAAAAGGCTGGCATTTGAATGCTTTGCAAAGACCTAGCAGTATTCACATCTGCGTGACGCTTCAACACGTATCTATAGTCAACGACTTTCTCCAGGACCTGCAAGAATCTGTCACCACTGTGAAAAGGAATCCAGGTCCAATTAATGGAGGATTAGCTCCAATATATGGTGCAGCAGAGAGAATGCCAGACAGATCTATGGTTCAAGAGTTGCTCATAAGCTACATGGATGGTACATGCTAG 1665 41.92 MAWICEWRISISFAMDSSVKSVLVEFRASANAFLSNYEPLALVFGPLLVLLLARLLQSFLDLVYETGLKATFLSFFMATIKLIPGVKRRIDSEKQKVVDKLQSSGNSKRESWRTELPMAGLGTEVIEKMKNEKQNDVVWQGKCSGTVYIGGSESEGHFSLINEAYSMFAHTNPLHLDVFQSVVRFEAEVVAMTAALLGSKVEASGGKICGNMTSGGTESILLAVKSTRDYMKSKKGIRKPEMIIPESAHSAYDKASQYFNIKLWRVPVDKEFKADVKAIRKFINRNTILIVGSAPGFPHGIIDPIVELGKLASSFGICLHVDFCLGGFVLPFARKLGYPIPPCDFSVKGVTSISVDVHKYGLAPKGTSVVLYRNHEIRKHQFVAVSEWSGGLYVSPTIAGSRPGGLIAGAWAAMMSLGEEGYLQNTKEIMEVSKRIHRGINEIPELFVIGKPDMTIIAFGSTVIDIFEVNDVMSSKGWHLNALQRPSSIHICVTLQHVSIVNDFLQDLQESVTTVKRNPGPINGGLAPIYGAAERMPDRSMVQELLISYMDGTC 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2199208 2207000 - ClCG06G002070.1 Cla06g00190 274382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00190 554 Gene3D - 115 551 - -
Cla06g00190 554 SUPERFAMILY PLP-dependent transferases 99 517 IPR015424 -
Cla06g00190 554 Gene3D Aspartate Aminotransferase, domain 1 123 517 IPR015422 GO:0003824
Cla06g00190 554 PANTHER - 35 554 - -
Cla06g00190 554 Gene3D - 151 418 IPR015421 GO:0003824
Cla06g00190 554 PANTHER SPHINGOSINE-1-PHOSPHATE LYASE 1 35 554 - -
Cla06g00190 554 Pfam Pyridoxal-dependent decarboxylase conserved domain 162 459 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00190 K01634 SGPL1, DPL1; sphinganine-1-phosphate aldolase [EC:4.1.2.27] - csv:101217975 1003.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01237 Cla-Chr4:27487052 Cla06g00190 Cla-Chr6:2199208 1.89E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1276 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00190 Cam06g0020 Cec06g0209 Cco06g0204 Clacu06g0207 Cmu06g0200 Cre06g0974 . . . . . . Chy11g01799 Cme11g02330 . . . . . . . . . . . . . . . Cpe17g01064 . Bhi12g02438 Tan06g1502 . . . . . . . . . . . . Lsi09g01734 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007917 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00190 Cla_Chr06 FPKM 1.223656 0.637963 2.503781 0.558477 0.605836 0.676101 0.831339 1.266027 0.976072 1.168675