Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00192 ATGGCGATTCCTTTTGGGAAGATCACCATTCTCGTTGGAGCTGGTATTGTTGGCTCTGTTCTGGCAAAAGAGGGACGCCTGCCATATGTATCAGATTTTGTAGCAGGTGCTGTTAAGATTGCTCTAAAGCGTATCAGTCGAGATGACTCTAGCACTTCAAAAAGCAAGCCACGCAATGACTCTTTAATGGCTCAGGTAAAAAGCTTACGTGAGGAACTGCAAATGTTAGCATCAAATCGCCAGATGACAATTGTGACCACTGGTGGAAGAGGGGGTAGGAAATATGGCGTAATCATTCTTGTAGTTGTAGTAGGGTACGGGATTGTTTGGATGAAGGGATGGAAACTTCCTGATATGATGTTTGCTACAAAGCGTAGTCTATCTGATGCTTGCAGTTCGGTTGCTAGGCAGCTTGAGAGTGTTTACTCATCCATTTCGGCTACAAAACGGAATTTATCTTCAAAAATGGACCACATTGACAAAAGTTTGGATGAGTCTTTGGATGTCACTGCTGATACACAAGAAAAGGTTTCAGAATTACGAAGTAAATCAGATACTTTTGGCAGGGATATTAAATCCGTTCATCATGCAGTTCAGACTTTGGAAAATAAACTAGAGAGTTTTGAAGAAAAGCAGGATCGAACGTATGAAGGTGTTAAGAAATTGTGTAATTATGCTTGGAACGTGGAGAATAGAAGAACTGCGGAACGTACTCAGGCAATTCCTTCTGGTTCCTCCAGGCAAGCTCTTGAACTCCCTCCAACAACACCTTCACCAAAGCAAAATCGGTCGTTGCCGATTGGCTTTTCACCTGAAGCACTGTCTCCCTCCGAGTCTAATGCTTCCTCTAACCAGGCTCAAGTTCAACGGCGATCCCTCCAAAATACTGTCTCAGACCCTGGCTTGATGTTAGTAGGGACTACAGATTCAAATGCTCCATCAAGCAGCAGCCTCAATACAATGTCGAATGGGACTAGTACATCCGATACTGCCAAAAGCGAGGCTGGGAATTCCGGTCTTTCCGGACTTGGATTTCTTACCAGAACGAGGAGTGCAATGAGTGCAGTATTCCGGCAGTCTCGCCCAGTTCTTAAAGGGATTTCTGATGGTTTATCTCGAGGAAAGAAATCTGAAGAAATGGAGAAACTGGTTAGAGAATTGTGGAATACCAATATGAAACATCCACAGGCATCTGAGGATGTGAACAAGGATATAATCTCTCACTTTGTTTTGCGCCTTGTATACTGCAGAACGGAGGAATTGAGAAAATGGTTTCTTTCTATGGAAACTATGCTATTCCGACACCGTTTTCTTTATGCAAGTTCTGAATCTCAGAAGCAGGTCTTTGTGGAGCTTGGTCTCCCATACAGAGCAATCAGTTATGCAGAATTTGAGGCTGTAAAGGACAAATTGGTTCAAGTTGCTCGGTTGATTGGTCAGACTGTACCAAGTGGTGCTATATACTATAAGGTACCATGGGAAGAAGTTCCAGAGCTAGTGGCTGGTCGAAGAATATTTCTCCATAAAGGATATGCATATATTGCTATGTATCAGGTGGTTTCCCTTGCTGCAACACAATTCCGCAGTTACCTATCAAAGGCCCTAAGTCTGACAAACAGGAAATGGACATCTACAATAAGAGAACAAGAGAAAGATAGGTTGACCCCAATAGTAGAAGCCCTTTGCACGAGCTACCTGGGTCCTGACTACTCACAGCCAAGAGAGTATGGTGATATATCAATAAAAGACCTTGACCAAATAGCTAAAAGTTCATTTCCTCTTTGCATGCGACACCTATTTGAAAAGCTGAAAGAAGATCATCATTTGAAGCATGGAGGGAGGATGCAATTAGGTCTCTTTCTCAAGGGTGTTGGTTTGAAGCTTGATGATGCCCTGGCTTTCTGGAAAGCTGAGTTCTCCCAGAGAGTTGGTGCCGAGAGGTTTGACAAAGAATATGCATACAGTATCAGGCATAATTATGGAAAAGAAGGCAAGAGAGTGGATTATTCGCCTTATTCCTGTCAAAAAATAATCTCATCATCACCTAGTGTTGGAGATCATCATGGATGTCCCTACAGACATTTCAGTGAAGACAACTTAAGAGCAGCTCTTGGTAAAATGGGAGTAAATAACAGGACAATGGACGATATAATGGACAAAGTGCGAAATAGACATTATCAGTTGGCATGCACCTTGACATTTGAATCGATCCATGGCTCGTCGTGTGATGCTGGGATTAATCATCCAAACCAGTACTTCATTGATAGTCAGAAGGTCCTTCAATCTAAGAACAATTCAACAGTCTAG 2307 42.65 MAIPFGKITILVGAGIVGSVLAKEGRLPYVSDFVAGAVKIALKRISRDDSSTSKSKPRNDSLMAQVKSLREELQMLASNRQMTIVTTGGRGGRKYGVIILVVVVGYGIVWMKGWKLPDMMFATKRSLSDACSSVARQLESVYSSISATKRNLSSKMDHIDKSLDESLDVTADTQEKVSELRSKSDTFGRDIKSVHHAVQTLENKLESFEEKQDRTYEGVKKLCNYAWNVENRRTAERTQAIPSGSSRQALELPPTTPSPKQNRSLPIGFSPEALSPSESNASSNQAQVQRRSLQNTVSDPGLMLVGTTDSNAPSSSSLNTMSNGTSTSDTAKSEAGNSGLSGLGFLTRTRSAMSAVFRQSRPVLKGISDGLSRGKKSEEMEKLVRELWNTNMKHPQASEDVNKDIISHFVLRLVYCRTEELRKWFLSMETMLFRHRFLYASSESQKQVFVELGLPYRAISYAEFEAVKDKLVQVARLIGQTVPSGAIYYKVPWEEVPELVAGRRIFLHKGYAYIAMYQVVSLAATQFRSYLSKALSLTNRKWTSTIREQEKDRLTPIVEALCTSYLGPDYSQPREYGDISIKDLDQIAKSSFPLCMRHLFEKLKEDHHLKHGGRMQLGLFLKGVGLKLDDALAFWKAEFSQRVGAERFDKEYAYSIRHNYGKEGKRVDYSPYSCQKIISSSPSVGDHHGCPYRHFSEDNLRAALGKMGVNNRTMDDIMDKVRNRHYQLACTLTFESIHGSSCDAGINHPNQYFIDSQKVLQSKNNSTV 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2225777 2244794 + ClCG06G002090.2 Cla06g00192 274384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00192 768 Coils Coil 59 79 - -
Cla06g00192 768 MobiDBLite consensus disorder prediction 236 265 - -
Cla06g00192 768 MobiDBLite consensus disorder prediction 273 338 - -
Cla06g00192 768 Pfam Protein of unknown function (DUF1664) 91 212 IPR012458 -
Cla06g00192 768 CDD PriL_PriS_Eukaryotic 396 756 IPR016558 -
Cla06g00192 768 Pfam Eukaryotic and archaeal DNA primase, large subunit 488 753 IPR007238 GO:0006269
Cla06g00192 768 PANTHER DNA PRIMASE LARGE SUBUNIT 362 765 IPR007238 GO:0006269
Cla06g00192 768 Coils Coil 191 211 - -
Cla06g00192 768 Gene3D - 358 561 - -
Cla06g00192 768 PANTHER DNA PRIMASE LARGE SUBUNIT 362 765 - -
Cla06g00192 768 MobiDBLite consensus disorder prediction 236 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00949 Cla-Chr2:15148367 Cla06g00192 Cla-Chr6:2225777 6.27E-32 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00192 K02685 - csv:101217274 763.837