Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00193 ATGTATTGGAAACTCAGAGGCATTGGTAATATGGATGAAAGGTCTACGGATGACATGAAAGGAACTAGAGTTGCTTTGATGGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGTAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGGAACCAAGGTCCAAGATTCTTGCCATTCGGCAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAACACGCCTCTTTGCAGTGGCAACTCACAGTTCGACTTTACCGACAGAAGAAAAAGTATGTTGCCCGGGTCGTTGGCTTTTGATTACAAAGAAAAACAACTTGCAATCTCTTGCATTCCCATAGGACTGTTTCCCAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGTTGGGAATGTTCAGAAAGTGCTCGGAAACGGATCAAATCGGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCCCAGCCAATTTCATCCACAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGACGGTAGCAGCGATGCCAATATCCGGTGCTACTCAACGTTCCAGGACGGACCTGATGGATCATCTGTTGATTTATTCAGGTTTTGA 987 46.61 MYWKLRGIGNMDERSTDDMKGTRVALMESSSSRLMKRSRAPGSVAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPENNTPLCSGNSQFDFTDRRKSMLPGSLAFDYKEKQLAISCIPIGLFPKSSDTQPFLNVGSSNVGNVQKVLGNGSNRFFNSDCALSLLSTPVEPGEINLSSMSQSNLIPPANFIHSDGLGLESDPINSGLVSDGSSDANIRCYSTFQDGPDGSSVDLFRF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2256226 2259305 + ClCG06G002110.1 Cla06g00193 274385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00193 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 5 321 - -
Cla06g00193 328 Gene3D - 42 111 IPR036893 GO:0003677|GO:0005634
Cla06g00193 328 Pfam SBP domain 50 123 IPR004333 GO:0003677
Cla06g00193 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Cla06g00193 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677|GO:0005634
Cla06g00193 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 321 IPR044817 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01141 Cla-Chr4:26608190 Cla06g00193 Cla-Chr6:2256226 8.17E-39 dispersed
Cla06g00193 Cla-Chr6:2256226 Cla06g00284 Cla-Chr6:3618269 2.83E-32 dispersed
Cla11g01862 Cla-Chr11:32143312 Cla06g00193 Cla-Chr6:2256226 2.83E-29 transposed
Cla03g00365 Cla-Chr3:4184832 Cla06g00193 Cla-Chr6:2256226 6.90E-44 wgd
Cla05g01423 Cla-Chr5:19621772 Cla06g00193 Cla-Chr6:2256226 2.34E-46 wgd
Cla06g00193 Cla-Chr6:2256226 Cla06g01752 Cla-Chr6:31051702 1.70E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61224 PF03110 SBP 7.40E-29 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00193 - - csv:101217032 643.269