Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00195 ATGGGAAGAGGGAGAGTAGAATTGAAGAGAATAGAGAACAAGATCAATCGACAAGTGACCTTCGCAAAACGAAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCGGTTCTTTGCGATGCTGAAGTTGCTCTCATCATCTTCTCTAATAGAGGAAAACTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACCTTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCTAATGTCTCCACAAGAGAGGCCTTGGAATTGAGCAGCCAGCAAGAGTATTTGAAGCTCAAAGCTCGCTATGAAGCTCTTCAACGATCCCAAAGGAACCTGTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAACTTGATATGTCACTGAAGCAGATCAGATCAACAAGGACTCAGTACATGCTGGATCAGCTCACTGATCTTCAACGTAAGGAGCATCTTCTTAATGAAGCAAACAAGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTTCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAGCAAGCTCAGCCTTCTGGTGATGCCTTCTTCCATCCTCTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCCATAACAGTGGTCACTGCTGGGCCAAGCATGAATAATTTCCTTCCAGGATGGTTGCCTTGA 729 43.21 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAQPSGDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2321007 2328285 + ClCG06G002130.2 Cla06g00195 274387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00195 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla06g00195 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla06g00195 242 Coils Coil 126 146 - -
Cla06g00195 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla06g00195 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Cla06g00195 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Cla06g00195 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cla06g00195 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla06g00195 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla06g00195 242 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Cla06g00195 242 Coils Coil 152 172 - -
Cla06g00195 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla06g00195 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Cla06g00195 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla06g00195 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla06g00195 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00019 Cla-Chr6:245023 Cla06g00195 Cla-Chr6:2321007 5.31E-75 dispersed
Cla06g00195 Cla-Chr6:2321007 Cla07g01523 Cla-Chr7:32406091 2.50E-113 dispersed
Cla08g01054 Cla-Chr8:23240146 Cla06g00195 Cla-Chr6:2321007 1.49E-46 dispersed
Cla11g01559 Cla-Chr11:29321179 Cla06g00195 Cla-Chr6:2321007 1.44E-35 dispersed
Cla06g00195 Cla-Chr6:2321007 Cla06g00196 Cla-Chr6:2343242 4.21E-27 tandem
Cla03g00363 Cla-Chr3:4173515 Cla06g00195 Cla-Chr6:2321007 3.12E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61225 PF01486 K-box 2.90E-26 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00195 - - csv:101216798 479.944