Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00202 ATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAAGTGTTCTTTATTTTACAGAATCATGAGAATTATCAGCTGACTGAGGAGGCTCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGATCACATTGTTCTTGTACACTACAGAGATATCAGTGAGGGAAGGTCTGGGACGGAATCGGGTTCTACTTCCGGTTCCTATTCGTCCCAAAATCTTGCTTCAGAATGTCAACAGACTTCATTGAGTCCAGGGTCTGTAGAAGTTACTTCTGACACTGGCAACCTTACTATTGGGTCAAATGGCATGGATGGGCAGTATGAAATATCCGAATTAAAAAGTTCAAACAATCGTGATGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTTCAGTGCTCCAGCATTCAGAAAATACTGTCCATGATAATACTTGTACGTCTGAGATGCAAGGTAATGTCAACACAGTGCTACTGTTTCTGGATATTGTTTTCCTCTTTCGTATAGATGCTAATGGAAAACATCACCATTACAATATGGCACACGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTGATGCACTTGATCCTAGTAAGACAGCCGTTCTTGAGTCTCAAGACAGACATTCTCTTCTATGGAATGAAAAAGAAAATCCATCATCACCTTCGACTGTTGACAATGGACAATGCAACTGGCTGTACAGCAGAGGAAAAACTTTTCCCATGCTAGGAGGCTGCACGTCTACAGAATATTCTTCACCACTAGACAATCATGATGTTAATTCCAACTACAACATACCATTTCTTAAACAAGAACATGGAAATTCTTTTGAGGTTGATACCAATTTAATTGTTGCACAAGTGCAGAAATTTACAATCCACCAAATAGTACCAGAGCAGGGTCATGCCACCGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGGGTACTTTGTTGCGAAGCACCTCCTCACCTCCCTGGGAAGGTTGCTCTCTGCATTACATCTGGCAATCAGGAACCCTGCAGTGAAGTCAGAGAGTTTGAATATAAAATGAATGTTTGCACTCATTGCCAGTCACATTCAACTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAGTGCAGAAATCTGACAAGTTAGATTCTGAATTTTGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTACTAGTTGGTAGTGAAACTCCTTCTGGTGCCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTCCGACTCTGGCTTTCTTCTCAACAGAAAGATAGGCACGATCTAGCAGGCTGTTCCTTGTCCAAGAAAGAACAAGGCGTTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCACTAAACCCAATTCTCGGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGAACCAGATGGTAAAAGTGCAGCGTCTATCGCAGACATCCATGGACACAAGGGGCTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAAGTGAGCTTCCTAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACGGTAAATTGCATTTCAAATGGGAACCTCTCTTCCGCGGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTAAGGAATGCTGCTCAAGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAAGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATTCAGGGGCTCTTAGCTATGTCAAAGTTGAATTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAGAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTCTTATCGCTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGTTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTCGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGGTTTCGTAGCGAGGTAGGATCCATTGATGAAAGTGAAGATGATGATATTATAACGGTGTTCCGCAAACAAAAGGTGGAAGGAACCATTGACGAGGCTGTTTCACGAGTGCTATCCATGGTTGACTCTCCCGATGCTCGTCAGCAATATCATCGTATGCTTCAAGGATTTCGAGAAGCCAAGGCTGAACTTGATGGTGCCAGTAACAACCCTGCAGCATTGACTTCTCTCGCCGATGTTTCTGGAATGGAAGATTCTGCGGTTACCCATGGTGGCCATACTTCTGAAAGCCTCAATCAATGGCGGAACCCTATACTGGAAGAGCGCGATTGA 2967 42.77 MMNAGYDINDLYREAQTRWLKPPEVFFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEGRSGTESGSTSGSYSSQNLASECQQTSLSPGSVEVTSDTGNLTIGSNGMDGQYEISELKSSNNRDVSQALRRIEEQLSLNEDSLKDIGPFYGHEEGSNSNLIDYYEMSNEDQFSVLQHSENTVHDNTCTSEMQGNVNTVLLFLDIVFLFRIDANGKHHHYNMAHEFIFSGEGTQPWGDALDPSKTAVLESQDRHSLLWNEKENPSSPSTVDNGQCNWLYSRGKTFPMLGGCTSTEYSSPLDNHDVNSNYNIPFLKQEHGNSFEVDTNLIVAQVQKFTIHQIVPEQGHATESTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVALCITSGNQEPCSEVREFEYKMNVCTHCQSHSTGATKSPEELLLLVRLVQLLLSDSSVQKSDKLDSEFWSNNLKAGDDQWSSLIEALLVGSETPSGAIDWLLQELLKDKFRLWLSSQQKDRHDLAGCSLSKKEQGVIHMIAGLGYVWALNPILGCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQEPDGKSAASIADIHGHKGLAGYLSEVALTSHLSSLTFEESELPKGSAEVEAEMTVNCISNGNLSSAEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEVGSIDESEDDDIITVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLQGFREAKAELDGASNNPAALTSLADVSGMEDSAVTHGGHTSESLNQWRNPILEERD 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2394206 2414122 + ClCG06G002180.2 Cla06g00202 274394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00202 988 Gene3D Immunoglobulins 401 494 IPR013783 -
Cla06g00202 988 MobiDBLite consensus disorder prediction 966 980 - -
Cla06g00202 988 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 957 - -
Cla06g00202 988 Gene3D - 566 697 IPR036770 -
Cla06g00202 988 Pfam IQ calmodulin-binding motif 835 854 IPR000048 GO:0005515
Cla06g00202 988 Pfam IQ calmodulin-binding motif 812 830 IPR000048 GO:0005515
Cla06g00202 988 SMART iq_5 752 774 IPR000048 GO:0005515
Cla06g00202 988 SMART iq_5 832 854 IPR000048 GO:0005515
Cla06g00202 988 SMART iq_5 809 831 IPR000048 GO:0005515
Cla06g00202 988 Pfam IPT/TIG domain 407 489 IPR002909 -
Cla06g00202 988 ProSiteProfiles Ankyrin repeat region circular profile. 635 661 - -
Cla06g00202 988 MobiDBLite consensus disorder prediction 963 988 - -
Cla06g00202 988 ProSiteProfiles IQ motif profile. 833 857 IPR000048 GO:0005515
Cla06g00202 988 MobiDBLite consensus disorder prediction 132 170 - -
Cla06g00202 988 Gene3D - 810 857 - -
Cla06g00202 988 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Cla06g00202 988 SUPERFAMILY Ankyrin repeat 604 696 IPR036770 -
Cla06g00202 988 SMART CG_1_2 11 129 IPR005559 GO:0003677
Cla06g00202 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 755 861 IPR027417 -
Cla06g00202 988 SUPERFAMILY E set domains 407 490 IPR014756 -
Cla06g00202 988 ProSiteProfiles Ankyrin repeat profile. 635 667 IPR002110 GO:0005515
Cla06g00202 988 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
Cla06g00202 988 Pfam Ankyrin repeats (many copies) 626 656 IPR002110 GO:0005515
Cla06g00202 988 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 957 - -
Cla06g00202 988 MobiDBLite consensus disorder prediction 131 170 - -
Cla06g00202 988 ProSiteProfiles IQ motif profile. 753 781 IPR000048 GO:0005515
Cla06g00202 988 ProSiteProfiles IQ motif profile. 810 839 IPR000048 GO:0005515
Cla06g00202 988 CDD IPT 407 491 - -
Cla06g00202 988 SMART ANK_2a 635 664 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00202 Cla-Chr6:2394206 Cla10g00851 Cla-Chr10:19518958 8.81E-41 dispersed
Cla06g00202 Cla-Chr6:2394206 Cla04g00738 Cla-Chr4:22399352 1.74E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61227 PF03859 CG-1 5.50E-48 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00202 K21596 - csv:101222798 1643.63