Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00204 ATGAGTTCATTCTTTGTTGGGTTTTCTTCTTCTTCTTCTTCTTCAGCTGCAACTTCCACTGCTATCTTTAATCCTTTCAGTACCTTTTTGCTGTATAGATCTCTGAAGATTTCTTCCATGAACTGGTTCATTAATGGTGGAGTTATGGAAACTAAGGCTGGTTTGCTTGGTGGGGGTGGAAAGCTATGGCTTCAATTGTGGGAAACTGTCATTGGAAATTGTTGCAAGATGCATCACCAGTATTACCAGTATATTGGATCCAAGAAAGTTGGAAAAACATGGTGGAGAAGGCTTTTGGTGGCTTGGGTTTTTAGCTCTACTCTTGCTTCTTTATGGATCTTCCATTACATGAGCTCCCAAGCTACAGAGAAGAGGAAAGAAGCCTTGGGAAGCATGTGTGATGAAAGGGCTAGAATGCTTCAAGATCAGTTTAATGTCAGTATGAATCATATTCAAGCAATGTCCATCCTCATCTCCACCTTCCATCATGGCAAAAACCCATCTGCTATAGATCAGAGGACGTTTGCGAGGTACACGGAAAGAACTGCTTTTGAGAGGCCTCTTACCAGTGGTGTGGCATATGCAGTAAGGGTGCTCCATTCTGAAAGAGAACATTTTGAGAAGCAACAGGGCTGGACAATTAAAAGGATGGACAAAATCGAACAAAGTCCAGTTCACGAAGATGACTATGCTCCAGAAGATCTGGAGCCATCACCCACCCAAGACGAATATGCTCCTGTAATCTTCGCACAGGATACAATTTCTCATGTCGTTTCTCTCGATATGCTGTCGGGAGTGGAAGACCGTAAGAATGTATTACGCGCTAGATCATCAGGAAAGGGAGTCTTAACTGCTCCATTCAGGTTAATCAAAACAAATCGTCTAGGGGTCATACTTACATTTGCGGTCTACAAAAGAGATCTTCCCTCAAATGCCACTCCAAATGAGAGGATTCAAGCAACAGATGGGTATGTCTTCCTTCTGATAATCAAAGTCGATATGCCTAGTTCTTGGTATCTTGGCGGAGTTTTTGATATCGAGTCTCTGGTGGAGAAGTTACTTCAACAGCTTGCAAGCAACCAAACCATCCTAGTGAATGTTTATGATACCACTAACCAATCACATCCAATCAGTATGTATGGTAAAGATGTATCAGTTGATGGGTTGCAGCATGTTAGCCCCCTTAACTTTGGGGATCCGGATAGGAAGCATGAGATGCGATGCAGATTCAAGCAAAAACAACCTTGGCCATGGCTGGCAATGACTACTTCAATTGGCATACTCATTATTGCATTGCTTGTGGGGTATATATTCCATGCAACGTTGAACCGAATTGCCAAAGTGGAGGATGATTATCATGAGATGATGGTACTCAAGAAACGGGCAGAAGATGCTGATATTGCCAAATCCCAGTTCCTTGCAACTGTTTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGTTGCATTTGCTTATGGACACTGACTTAGATGTGACTCAACAAGATTACGTTAAAACTGCACAAGACAGTGGAAAAGCTTTGGTATCATTGATAAACGAGGTTTTGGATCAGGCAAAAATTGAATCTGGAAAGCTTGAGCTTGAAGCTATACCTTTCAATCTGCGAGCAATTTTGGATGATATTTTATCACTCTTCTCTGGGAAATCTCAAGAAAAAGGACTGGAGCTGGCAGTTTACATTTCAGATAGTGTTCCCGAGACGCTTATTGGTGATCCTGGAAGGTTTAGGCAAATCATCACTAATCTTGTGGGAAACTCAATCAAGGCAAGGCTTTCTTCTTTCACAGAGAAAGGGCACATATTTGTCACTGTTAATCTCGTCAAGGAGGTTATTGAATCAATTGATCTAGAGATCGAGTCATCAACAAATAGCACCTTGAGTGGCTATCCTATTGCGAATAGACGTCTCAGCTGGGCAGGATTTCGAACATTCAGTCAAGAGGGACCCACTGCTTGTCATTTCATGCCATCTCCACCAGACCTTATTAACCTCATGGTATCCGTGGAAGATACAGGTGTTGGTATTCCTCTAGAAGCCCAATCACGCATTTTCACTCCCTTCATGCAGGTTCGACCATCCATCTCTAGAACTCATGGGGGAACAGGTATTGGGCTGAGTATTAGCAAATGTTTGGTTGGCCTCATGAAGGGGGAGATTGGTTTTGTGAGTGTACCTAAGATTGGCTCTACCTTCACATTCACTGCAGTTTTCACAAACGGATCTTCCAATTTGAGTGAGTATAACAAAACCCAACAAATTAAGAACACTTCCATCACTGCAACCTCAGAATTTAAGGGTATGAGAGCATTAGTTGTGGACCATCAACCTATTCGAGCCAAAGTATCAAGATATCATATCCAACGACTTGGAATAAATGTCGAAGTCTTATCTGACTTGAATCAATGTCTGTCTACCACGACTATTAGTGGTTCAACTATCAATATGATTTTTGTTGAGCAGAAACTTTGGGATCAGGATACGAGCACATCAGATCATTTTATCAAAAACTTGAGAAATTCTTATGCGGTTCCTCCCAAACTATTTCTTCTTACTAGCTCCATTAGTTCTTCAAAAACTAGCACTATAATTTCTGATGCATTCACTCCCACTGTCATCTTAAAGCCCTTGAGGGCAGGCATGCTCGCTGCCTCTCTACACCGAGTCATGGGTGTGGGGATCAAGGTTAATCCTCGCAATGGAGAGCTTCCTGTTCTCTCACTCCGTAGTTTACTTCTTGGTCGAAAAATTCTGGTAATAGATGACAATAAGGTGAATCGTATAGTCGCTGCTGGTGCTCTACAGCGGTATGGAGCTGATGTAGTATGTGAAAACAGTGGACGAGATGCAATCCGACTGCTTACGCCACCCCATCATTTTGATGCATGTTTCATGGATATTCAGATGCCAGAAATGGATGGCTTTGAAGCTACAAGAAGAATTCGGGAAATCGAACATCAAATCAATGATGGTATCCAAATTGGAGAACTATCAAAAGAAGCATACGAGAATACATGTTATTGGCGCGTTCCCATCTTGGCCATGACTGCAGACGTAATCCAGGCCACGCATGAGGAATGCCTTCGGTGTGGGATGGATGGTCAGGCATGTACAGCATGCTTAAAAGGGTGTAAATTACCTCCGATCGAAGGTGATCGAGTTCTTGGATTGCTTCATATTATACCAGGCAAGCCTAAATTTTGTGGAAGAGTGTAA 3243 42.43 MSSFFVGFSSSSSSSAATSTAIFNPFSTFLLYRSLKISSMNWFINGGVMETKAGLLGGGGKLWLQLWETVIGNCCKMHHQYYQYIGSKKVGKTWWRRLLVAWVFSSTLASLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREHFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGVEDRKNVLRARSSGKGVLTAPFRLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYVFLLIIKVDMPSSWYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSVDGLQHVSPLNFGDPDRKHEMRCRFKQKQPWPWLAMTTSIGILIIALLVGYIFHATLNRIAKVEDDYHEMMVLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNLRAILDDILSLFSGKSQEKGLELAVYISDSVPETLIGDPGRFRQIITNLVGNSIKARLSSFTEKGHIFVTVNLVKEVIESIDLEIESSTNSTLSGYPIANRRLSWAGFRTFSQEGPTACHFMPSPPDLINLMVSVEDTGVGIPLEAQSRIFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKIGSTFTFTAVFTNGSSNLSEYNKTQQIKNTSITATSEFKGMRALVVDHQPIRAKVSRYHIQRLGINVEVLSDLNQCLSTTTISGSTINMIFVEQKLWDQDTSTSDHFIKNLRNSYAVPPKLFLLTSSISSSKTSTIISDAFTPTVILKPLRAGMLAASLHRVMGVGIKVNPRNGELPVLSLRSLLLGRKILVIDDNKVNRIVAAGALQRYGADVVCENSGRDAIRLLTPPHHFDACFMDIQMPEMDGFEATRRIREIEHQINDGIQIGELSKEAYENTCYWRVPILAMTADVIQATHEECLRCGMDGQACTACLKGCKLPPIEGDRVLGLLHIIPGKPKFCGRV 1080
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2419644 2426526 - ClCG06G002200.1 Cla06g00204 274396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00204 1080 CDD HATPase_EvgS-ArcB-TorS-like 585 747 - -
Cla06g00204 1080 ProSiteProfiles Histidine kinase domain profile. 475 749 IPR005467 -
Cla06g00204 1080 CDD HisKA 468 529 IPR003661 GO:0000155|GO:0007165
Cla06g00204 1080 Pfam His Kinase A (phospho-acceptor) domain 468 533 IPR003661 GO:0000155|GO:0007165
Cla06g00204 1080 Gene3D - 917 1046 - -
Cla06g00204 1080 SUPERFAMILY CheY-like 923 1043 IPR011006 -
Cla06g00204 1080 Gene3D - 437 531 - -
Cla06g00204 1080 ProSiteProfiles CHASE domain profile. 166 407 IPR006189 -
Cla06g00204 1080 PANTHER TWO-COMPONENT HISTIDINE KINASE 67 1043 - -
Cla06g00204 1080 Gene3D CHASE domain 170 414 IPR042240 -
Cla06g00204 1080 Gene3D - 532 750 IPR036890 -
Cla06g00204 1080 PRINTS Bacterial sensor protein C-terminal signature 674 688 IPR004358 GO:0016310|GO:0016772
Cla06g00204 1080 PRINTS Bacterial sensor protein C-terminal signature 692 702 IPR004358 GO:0016310|GO:0016772
Cla06g00204 1080 PRINTS Bacterial sensor protein C-terminal signature 709 727 IPR004358 GO:0016310|GO:0016772
Cla06g00204 1080 PANTHER HISTIDINE KINASE 3 67 1043 - -
Cla06g00204 1080 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 522 744 IPR036890 -
Cla06g00204 1080 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 580 747 IPR003594 -
Cla06g00204 1080 Pfam Response regulator receiver domain 926 997 IPR001789 GO:0000160
Cla06g00204 1080 Gene3D - 117 169 - -
Cla06g00204 1080 SMART HKATPase_4 580 749 IPR003594 -
Cla06g00204 1080 SMART CHASE_2 166 382 IPR006189 -
Cla06g00204 1080 CDD REC_hyHK_CKI1_RcsC-like 926 1043 - -
Cla06g00204 1080 SMART HisKA_10 468 533 IPR003661 GO:0000155|GO:0007165
Cla06g00204 1080 ProSiteProfiles Response regulatory domain profile. 925 1066 IPR001789 GO:0000160
Cla06g00204 1080 Pfam CHASE domain 169 380 IPR006189 -
Cla06g00204 1080 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 454 534 IPR036097 GO:0000155|GO:0007165
Cla06g00204 1080 SMART REC_2 924 1050 IPR001789 GO:0000160
Cla06g00204 1080 ProSiteProfiles Response regulatory domain profile. 778 899 IPR001789 GO:0000160
Cla06g00204 1080 SUPERFAMILY CheY-like 773 900 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00917 Cla-Chr2:14012294 Cla06g00204 Cla-Chr6:2419644 0 dispersed
Cla06g00204 Cla-Chr6:2419644 Cla11g00097 Cla-Chr11:1275702 0 dispersed
Cla08g00910 Cla-Chr8:21593105 Cla06g00204 Cla-Chr6:2419644 3.39E-08 dispersed
Cla06g00204 Cla-Chr6:2419644 Cla02g00275 Cla-Chr2:2706911 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61228 PF03924 CHASE 1.10E-32 CL0165 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00204 K14489 - csv:101216313 1832.38