Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00217 ATGGATTTTGATGATTTAAGCCCCAAAGATTGCCGCTTGATCGGTAACTACATATTGGGGCCGAAAATCGGTTCGGGTTCGTTCGCCGTAGTGTGGAAGTCAAGGCATAGGCACTTGGGAACGGTTGTCGCCGTTAAAGAGATTCAAAAAAAGCATCTTAGTCCCAAAGTTAGTGACAGTTTGCTCAGAGAGATTTCTATTCTCAGCACTATCAATCATCCCAACATCATTCGTCTCTTCGAAGCCATTCAGACTGATGATAGGATTTATCTTATACTGGAGTACTGTGATGGTGGTGACCTTTGGGGCTATATTAATCGCCATGGAAAAGTATCTGAAGCAGTTGCTAGAGACTTAATGAGACAATTGGCTACTGGCTTGAAAGTTCTTCAAGAGAAACACCTCATTCATAGAGATTTAAAGCCTCAGAACTTGCTGTTGTCTTCTAAGGAAGGGACTCCGCTGTTGAAGATTGGAGATTTTGGATTTGCAAGGTCCTTAGAAGATCAGGCGTTGGCTGATACTCTTTGTGGATCACCTTTGTATATGGCTCCAGAAATTATTCAGAACAAAAAATATGATGCCAAGGCTGATTTATGGAGTGTTGGAGCAATTTTGTTTCAGCTATTGACAGGGAAGCCTCCATTTAGTGGCAATCATCCATTTCAGCTCTTCCAGAATATCTTGGAATCCACTGAGCTAAGATTTCCTAAAGGTGCTTTGGAAGAGCTACATCCTGACTCTTTGAATCTTTGCAGAAGCCTTTTACGTCAAAATCCAGTCGAACGGCTTTCATTCAAGGAGTTCTTCGAGCACAAATTCTTTCAGGAGCCAAGATCAAATAAAGCTGTTGAGACAACAACTGTTGTTCGGTCATTTGAATCAGCCAGCTCAGAAACAGCAAAGGTTAAGTCTCACTTAGAACATCCTATTGACTCACCAAGCAGAGATTCAGAAATCACTAGTTCATCCGTACATAACACCAGAGGGAAGAACATTTGCAGTTTGGTGAGGGAACAACCTATTGAGACATCAAACGGAGAGGCAGAGATCACTAGCTCATCCGAACATAACAGAATATCCAGAGGGAAGAACATTTGCAGTTCGGTGAGGGAACAACCTATTGAGCCAATGCTCAATCTTGGAGTACATGAGCTAAGAAAATCTCTTGATTTTCAACAATCCCTGAATCAGATTGAAGGTCTGTTTTATCCTGATCTAGATCTGCTCTTTCCACCTTATTTTATTTATTTTTTATTATTATTTTTACACTCTGTTTGGCCTTTTTTGCCCGCAGTTTCTGATTCAATGGAGTCAATTGAGAAAGATTACGTTCTTGTGAATGCTCATTGTCCTTCAATGGAGACCTCTTCCTATCACCTTGAAACATCATTAGAAGGTTGTTCATTGAGAGTTTCCCATGCTCTTAGTATCGATCAGGATATGATAGCCAAAACCCAGAAAAAGGAACTTATTGCTACTACAAGAGATGTCGGAGAAAGTTCAAGGAGTCGAGGTCAATTCTCAATGCCGTGTGCAGCATCTATGTTAAAAGAAGTACAAGGACTGTCCATATTGCATCCCTCTACCAGGCTCCAGTTATTTAATCAGTATGTCCAGGTTCTTTCAGATTTGTCGAAAGAAAAGTGTAATGCAGGGATGTTTTTGGAATCATTTTCGGTTGGACTAGTTGCTTTAGCTTTATGGAAGGAAGCCGTAGAAATTAGTGGTGCTTGGCTGAGTTCTTCTGACGAAAGAGAATCTTCAAAAAGTAGTTTGGGAATAGATTCTACCCCTCTTCTGAAAGACGCTGATAAGGCTGCAAATAAGGAAGAAACTGTAGATTTTAATAGGCCATCATCTGTTTCTAAGTGGGCACAGCTAGGGTTTATTGCTGCAGTGGATCGAACCGAGAAGTTATCTCAAAATATCCAAGAGATCGATGGTGCAACTGTGATACCTGATGCTATGGAAATTATATTCCAAAAGGCAATTGCCCTTGGGATAAGTGGTGCGGTAGATCAATACATGGAAAACAAAGACAATGCTGCTGCTTCATATTCCAAAGCCATTCTTCTGTTATCATTCATTTTGGGAGAAGCTGAATCCCTTGACTCTCCGTTTTCATTAACTTTGTGCAATAAGCAACGAATTCAACATTATATTCATTACTTGCAGACTCAGACTAACTTGTTATCGTCGCAGCCGTTACAAAAGCAATCGCAAGGTGCTCCCTCGACAAGTAAATGA 2250 40.71 MDFDDLSPKDCRLIGNYILGPKIGSGSFAVVWKSRHRHLGTVVAVKEIQKKHLSPKVSDSLLREISILSTINHPNIIRLFEAIQTDDRIYLILEYCDGGDLWGYINRHGKVSEAVARDLMRQLATGLKVLQEKHLIHRDLKPQNLLLSSKEGTPLLKIGDFGFARSLEDQALADTLCGSPLYMAPEIIQNKKYDAKADLWSVGAILFQLLTGKPPFSGNHPFQLFQNILESTELRFPKGALEELHPDSLNLCRSLLRQNPVERLSFKEFFEHKFFQEPRSNKAVETTTVVRSFESASSETAKVKSHLEHPIDSPSRDSEITSSSVHNTRGKNICSLVREQPIETSNGEAEITSSSEHNRISRGKNICSSVREQPIEPMLNLGVHELRKSLDFQQSLNQIEGLFYPDLDLLFPPYFIYFLLLFLHSVWPFLPAVSDSMESIEKDYVLVNAHCPSMETSSYHLETSLEGCSLRVSHALSIDQDMIAKTQKKELIATTRDVGESSRSRGQFSMPCAASMLKEVQGLSILHPSTRLQLFNQYVQVLSDLSKEKCNAGMFLESFSVGLVALALWKEAVEISGAWLSSSDERESSKSSLGIDSTPLLKDADKAANKEETVDFNRPSSVSKWAQLGFIAAVDRTEKLSQNIQEIDGATVIPDAMEIIFQKAIALGISGAVDQYMENKDNAAASYSKAILLLSFILGEAESLDSPFSLTLCNKQRIQHYIHYLQTQTNLLSSQPLQKQSQGAPSTSK 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2575877 2583138 - ClCG06G002340.2 Cla06g00217 274409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00217 749 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00217 749 ProSiteProfiles Protein kinase domain profile. 17 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00217 749 SMART serkin_6 17 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00217 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Cla06g00217 749 MobiDBLite consensus disorder prediction 301 315 - -
Cla06g00217 749 CDD STKc_ATG1_ULK_like 23 265 - -
Cla06g00217 749 Gene3D Transferase(Phosphotransferase) domain 1 9 358 - -
Cla06g00217 749 PANTHER BNAC06G18300D PROTEIN 11 304 - -
Cla06g00217 749 PANTHER BNAC06G18300D PROTEIN 513 718 - -
Cla06g00217 749 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Cla06g00217 749 SUPERFAMILY Protein kinase-like (PK-like) 13 276 IPR011009 -
Cla06g00217 749 MobiDBLite consensus disorder prediction 301 327 - -
Cla06g00217 749 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 11 304 IPR045269 GO:0004674|GO:0006914
Cla06g00217 749 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 513 718 IPR045269 GO:0004674|GO:0006914
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00217 - - K08269 csv:101221622 1105.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00217 Cla-Chr6:2575877 Cla10g02039 Cla-Chr10:36123710 5.64E-23 dispersed
Cla06g00217 Cla-Chr6:2575877 Cla06g00622 Cla-Chr6:7606407 7.27E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1214 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00217 . . . . . . Cone14ag0689 Cone15ag0711 . . . . . . . . . . . . . . . . . . . . . Cpe17g01086 . . . . . . . . . . . . . . . . . . .
Vvi15g600 . . Bda03g01026 . . . Bma04g00932 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0474 Cone15ag0505 . . . Csa06g00838 Chy11g01779 . . . . . . . . . . . . . . . . . . Bhi12g02273 . . . . . . Cla06g00217 . . . . . . Lsi09g01709 . . Cme11g02310
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007724 1 4 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80610 PF00069 Pkinase 1.60E-72 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00217 Cla_Chr06 FPKM 27.164291 29.182825 0.164198 0.232604 0.447129 0.729167 0.541194 650.217957 628.672302 613.097107