Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00220 ATGAATTTTCACAAACAAGACATGGATCAATTTCTTACCAAAACAAAAGAAGATCAAGAAGATCAAGAAGAAGAAGATGAAGAAGAAGAAGAAGAAGATCAAGATCAAGTTGTTGCATGCAATTTCTTCCCAAATTCTCACTCCCAATTAACTCAACAACAAGATCGAGATCAAGAAAGTGGAAATTATGAGTCTCAAAATGAAGATCAACCGATACTCATGGATTTATCCTTAAGAATGGAAAGCAATGGCTTTGATGGTGTTGTAGAAAGAGAACACATGTTTGATAAAGTTGTTACTCCAAGTGATGTTGGCAAATTAAACCGTTTAGTCATCCCAAAACAACATGCTGAAAAATACTTCCCTTTAGACTCATCCACCAACGACAAAGGCCTCATCTTGAACTTTGAAGACCGTCATGGCAAGCCTTGGCGCTTTCGTTACTCTTATTGGAATAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTTGTTAAGGAGAAAAAACTCGACGCCGGCGACATCGTTTCCTTCCACCGTGCTCTACCGAGTCATTCCGCCAACGACAACCGTCTTTTTATCGACTGGCGTCGTCGTCGCCCTGACGCTCCTACTCCTCATCACAATCATCACCACCATTTCTCCAACCCTTTTCTCTTTCGTTGGGCTACTGCTCGTCACTTGCCACCACCACTGCCTCCTATGCGACGAACAACTCAACACCACCATCTTTACCCTAATTACGGGTTTGAAGTCCCTAACTTTGGGATGTCTAATAACAATAATTCTTCCATGTATTATTTTCGACCTATGTCGCCTTCTTCTTCTTCTTCGTCTCTTTATAGGATGGGAAATGGGGATGAGATTGTTGTTAATAATCAAGAATGTTCTTCTATGGGGATTATTAACAAACCCGGCTCCGGCGCTGCGAAACGGTTGAGACTCTTTGGAGTGAATATGGAGTGTGCTTCACCGGACGGAGAAGGAGGAGGAGGAGAGGATTTGTCGAACAGTGGCGATTCGAGAAGAGGGAAAGAACCCTTGTCATTGAATTGGGATTTACTTTAA 1074 42.36 MNFHKQDMDQFLTKTKEDQEDQEEEDEEEEEEDQDQVVACNFFPNSHSQLTQQQDRDQESGNYESQNEDQPILMDLSLRMESNGFDGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRALPSHSANDNRLFIDWRRRRPDAPTPHHNHHHHFSNPFLFRWATARHLPPPLPPMRRTTQHHHLYPNYGFEVPNFGMSNNNNSSMYYFRPMSPSSSSSSLYRMGNGDEIVVNNQECSSMGIINKPGSGAAKRLRLFGVNMECASPDGEGGGGEDLSNSGDSRRGKEPLSLNWDLL 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2625118 2626191 + ClCG06G002370.2 Cla06g00220 274412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00220 357 Pfam B3 DNA binding domain 95 201 IPR003340 GO:0003677
Cla06g00220 357 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 26 328 IPR044800 GO:0003700
Cla06g00220 357 Coils Coil 357 357 - -
Cla06g00220 357 MobiDBLite consensus disorder prediction 39 70 - -
Cla06g00220 357 MobiDBLite consensus disorder prediction 1 70 - -
Cla06g00220 357 MobiDBLite consensus disorder prediction 1 18 - -
Cla06g00220 357 CDD B3_DNA 93 182 IPR003340 GO:0003677
Cla06g00220 357 Gene3D - 88 216 IPR015300 -
Cla06g00220 357 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 26 328 - -
Cla06g00220 357 SMART B3_2 95 202 IPR003340 GO:0003677
Cla06g00220 357 MobiDBLite consensus disorder prediction 325 357 - -
Cla06g00220 357 ProSiteProfiles B3 DNA-binding domain profile. 95 202 IPR003340 GO:0003677
Cla06g00220 357 SUPERFAMILY DNA-binding pseudobarrel domain 92 183 IPR015300 -
Cla06g00220 357 Coils Coil 12 36 - -
Cla06g00220 357 MobiDBLite consensus disorder prediction 19 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00124 Cla-Chr1:1170541 Cla06g00220 Cla-Chr6:2625118 1.12E-61 dispersed
Cla06g00220 Cla-Chr6:2625118 Cla10g01776 Cla-Chr10:33700239 1.92E-46 dispersed
Cla06g00220 Cla-Chr6:2625118 Cla07g00776 Cla-Chr7:21656637 1.03E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61230 PF02362 B3 2.40E-28 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00220 - - bhj:120067991 562.762