Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00255 ATGGGGAAGAAAGGAGGTAGCTCATGGTTGACTGCCGTCAAAAGGGCTTTCAGATCTCCCACTAAAGATGATGATGAAAAGAGAAGAGAGAAACGCCGCTGGATTTTCAGAAAACCAACAAATCAGCCGCCGGAGCCACTCGCCGCCCACCAACCGCCGTCTAAGCCCCCGGCTCTCTCCACTCATTCTGTAGCTTTAGAAGACCAGAAACATGCCCTTGCAGTGGCTGAAGCTGCCATGGTCGCCGCCAGAGCGGCTGCACAAGCCGTCCACCTCACCCGCCCTGCCCGTCCTGGATTGGATCGCCATCGCCTCGCCGCCATTGTGATTCAAACTGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTACGGGCATTGAAGGGGTTGGTGAAGTTGCAGGCATTAGTGAGAGGACACAATGTGAGGAAGCAAGCAAAGACGACGCTGCAGTGTATGAAAGCATTAGTAAGAGTGCAGGAAAAAGTTCTCGATCACCGGATGCGACTTTCCCTCGAGGGTAGCCGACGGTCTACATTCAGCGACACCAACAGCGTGTATGAATCTCGCTATGCTCAAGACGTCTCCGAGAGGAAGACTATTAAGTGTGTATCAAGAGAAGGAAGCAGCATTACGGAGGATTGGGATGAACGTGCTCACACAGTTGAAGAAGTAAAAGCAATGTTACAATATAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCATTCCTTTTCTCAACAGATATGGAGGACTGGAAAGAGCCCATCAATAGGAAATCAAGCGGAGCTTGAAGAAGGACAAAAATGGCTCGACCAATGGATGGCGAAGAAGCCATGGGAGAATAGAGCAAGAGCTTCCACAGATAACAGACCACAGCCCCTTAAAACGCTCGAAATCGACACCTCTAGGCCCTACTCCTACTTATCTCCCAACAATCTCCACACAACGAATTATCAAACGCAATCACAAAGATCGAACTCGCTTTCCTCATCCTCCCCACTCCACAGAGCCCATCACCATCAGTTCTCCATCACCCCTTCCCCATCAAAATCTCGACCAGTCCAGCAAGTTCGGTCGGCGAGTCCCCGCTACAGCAGAGAAGATAGAAACCAAATCAGCCACCACATTACATCCCAAACACCAAGCTTGAGGACAAAACATCAACATCACAAATGGGGTAGTGGTGGTGGGACTTCAATGCCAAATTACATGGCAGCAACAGAGTCAGCCAAGGCACGAGTCCGGTCGCAAAGTGCGCCGAGGCAAAGGCCAGCAACACCCGAGAGGGAACGAGTTGGAACTGCGAGGAAGCGGCTATCTTTTCCAGTACCGCCGGATCCTTACGGTAGAATAGCAGGGTGCGGTGTTTATGGGAATAGCATGAAGAGCCCAAGTTTTAAGAGTGCTTGTGGAAGGTATGGTGGGTTGGAGGAACAGTCTAACTATTCTTCTTGCTATACAGAAAGCCATGGAGGAGAGGTTTCACCATCTTCAACCACTGACCTCAGAAGGTGGCTGAGATGA 1530 50.33 MGKKGGSSWLTAVKRAFRSPTKDDDEKRREKRRWIFRKPTNQPPEPLAAHQPPSKPPALSTHSVALEDQKHALAVAEAAMVAARAAAQAVHLTRPARPGLDRHRLAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEKVLDHRMRLSLEGSRRSTFSDTNSVYESRYAQDVSERKTIKCVSREGSSITEDWDERAHTVEEVKAMLQYRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQAELEEGQKWLDQWMAKKPWENRARASTDNRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQTQSQRSNSLSSSSPLHRAHHHQFSITPSPSKSRPVQQVRSASPRYSREDRNQISHHITSQTPSLRTKHQHHKWGSGGGTSMPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYGRIAGCGVYGNSMKSPSFKSACGRYGGLEEQSNYSSCYTESHGGEVSPSSTTDLRRWLR 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3189292 3191599 + ClCG06G002740.1 Cla06g00255 274447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00255 509 MobiDBLite consensus disorder prediction 1 62 - -
Cla06g00255 509 Pfam Protein of unknown function (DUF4005) 363 457 IPR025064 -
Cla06g00255 509 PANTHER IQ-DOMAIN 5-RELATED 1 509 - -
Cla06g00255 509 Gene3D - 100 157 - -
Cla06g00255 509 MobiDBLite consensus disorder prediction 304 363 - -
Cla06g00255 509 MobiDBLite consensus disorder prediction 484 509 - -
Cla06g00255 509 ProSiteProfiles IQ motif profile. 127 154 IPR000048 GO:0005515
Cla06g00255 509 SMART iq_5 102 124 IPR000048 GO:0005515
Cla06g00255 509 SMART iq_5 125 146 IPR000048 GO:0005515
Cla06g00255 509 ProSiteProfiles IQ motif profile. 103 131 IPR000048 GO:0005515
Cla06g00255 509 MobiDBLite consensus disorder prediction 283 446 - -
Cla06g00255 509 Pfam IQ calmodulin-binding motif 106 124 IPR000048 GO:0005515
Cla06g00255 509 Pfam IQ calmodulin-binding motif 130 146 IPR000048 GO:0005515
Cla06g00255 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 148 IPR027417 -
Cla06g00255 509 MobiDBLite consensus disorder prediction 402 425 - -
Cla06g00255 509 MobiDBLite consensus disorder prediction 17 38 - -
Cla06g00255 509 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 509 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00019 Cla-Chr5:255020 Cla06g00255 Cla-Chr6:3189292 6.88E-144 dispersed
Cla05g00859 Cla-Chr5:8507408 Cla06g00255 Cla-Chr6:3189292 1.13E-20 dispersed
Cla07g01437 Cla-Chr7:31605828 Cla06g00255 Cla-Chr6:3189292 4.27E-24 dispersed
Cla06g00255 Cla-Chr6:3189292 Cla09g01991 Cla-Chr9:37477381 4.72E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00255 - - csv:101207978 907.901