Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00255 ATGGGGAAGAAAGGAGGTAGCTCATGGTTGACTGCCGTCAAAAGGGCTTTCAGATCTCCCACTAAAGATGATGATGAAAAGAGAAGAGAGAAACGCCGCTGGATTTTCAGAAAACCAACAAATCAGCCGCCGGAGCCACTCGCCGCCCACCAACCGCCGTCTAAGCCCCCGGCTCTCTCCACTCATTCTGTAGCTTTAGAAGACCAGAAACATGCCCTTGCAGTGGCTGAAGCTGCCATGGTCGCCGCCAGAGCGGCTGCACAAGCCGTCCACCTCACCCGCCCTGCCCGTCCTGGATTGGATCGCCATCGCCTCGCCGCCATTGTGATTCAAACTGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTACGGGCATTGAAGGGGTTGGTGAAGTTGCAGGCATTAGTGAGAGGACACAATGTGAGGAAGCAAGCAAAGACGACGCTGCAGTGTATGAAAGCATTAGTAAGAGTGCAGGAAAAAGTTCTCGATCACCGGATGCGACTTTCCCTCGAGGGTAGCCGACGGTCTACATTCAGCGACACCAACAGCGTGTATGAATCTCGCTATGCTCAAGACGTCTCCGAGAGGAAGACTATTAAGTGTGTATCAAGAGAAGGAAGCAGCATTACGGAGGATTGGGATGAACGTGCTCACACAGTTGAAGAAGTAAAAGCAATGTTACAATATAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCATTCCTTTTCTCAACAGATATGGAGGACTGGAAAGAGCCCATCAATAGGAAATCAAGCGGAGCTTGAAGAAGGACAAAAATGGCTCGACCAATGGATGGCGAAGAAGCCATGGGAGAATAGAGCAAGAGCTTCCACAGATAACAGACCACAGCCCCTTAAAACGCTCGAAATCGACACCTCTAGGCCCTACTCCTACTTATCTCCCAACAATCTCCACACAACGAATTATCAAACGCAATCACAAAGATCGAACTCGCTTTCCTCATCCTCCCCACTCCACAGAGCCCATCACCATCAGTTCTCCATCACCCCTTCCCCATCAAAATCTCGACCAGTCCAGCAAGTTCGGTCGGCGAGTCCCCGCTACAGCAGAGAAGATAGAAACCAAATCAGCCACCACATTACATCCCAAACACCAAGCTTGAGGACAAAACATCAACATCACAAATGGGGTAGTGGTGGTGGGACTTCAATGCCAAATTACATGGCAGCAACAGAGTCAGCCAAGGCACGAGTCCGGTCGCAAAGTGCGCCGAGGCAAAGGCCAGCAACACCCGAGAGGGAACGAGTTGGAACTGCGAGGAAGCGGCTATCTTTTCCAGTACCGCCGGATCCTTACGGTAGAATAGCAGGGTGCGGTGTTTATGGGAATAGCATGAAGAGCCCAAGTTTTAAGAGTGCTTGTGGAAGGTATGGTGGGTTGGAGGAACAGTCTAACTATTCTTCTTGCTATACAGAAAGCCATGGAGGAGAGGTTTCACCATCTTCAACCACTGACCTCAGAAGGTGGCTGAGATGA 1530 50.33 MGKKGGSSWLTAVKRAFRSPTKDDDEKRREKRRWIFRKPTNQPPEPLAAHQPPSKPPALSTHSVALEDQKHALAVAEAAMVAARAAAQAVHLTRPARPGLDRHRLAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEKVLDHRMRLSLEGSRRSTFSDTNSVYESRYAQDVSERKTIKCVSREGSSITEDWDERAHTVEEVKAMLQYRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQAELEEGQKWLDQWMAKKPWENRARASTDNRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQTQSQRSNSLSSSSPLHRAHHHQFSITPSPSKSRPVQQVRSASPRYSREDRNQISHHITSQTPSLRTKHQHHKWGSGGGTSMPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYGRIAGCGVYGNSMKSPSFKSACGRYGGLEEQSNYSSCYTESHGGEVSPSSTTDLRRWLR 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3189292 3191599 + ClCG06G002740.1 Cla06g00255 274447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00255 509 MobiDBLite consensus disorder prediction 1 62 - -
Cla06g00255 509 Pfam Protein of unknown function (DUF4005) 363 457 IPR025064 -
Cla06g00255 509 PANTHER IQ-DOMAIN 5-RELATED 1 509 - -
Cla06g00255 509 Gene3D - 100 157 - -
Cla06g00255 509 MobiDBLite consensus disorder prediction 304 363 - -
Cla06g00255 509 MobiDBLite consensus disorder prediction 484 509 - -
Cla06g00255 509 ProSiteProfiles IQ motif profile. 127 154 IPR000048 GO:0005515
Cla06g00255 509 SMART iq_5 102 124 IPR000048 GO:0005515
Cla06g00255 509 SMART iq_5 125 146 IPR000048 GO:0005515
Cla06g00255 509 ProSiteProfiles IQ motif profile. 103 131 IPR000048 GO:0005515
Cla06g00255 509 MobiDBLite consensus disorder prediction 283 446 - -
Cla06g00255 509 Pfam IQ calmodulin-binding motif 106 124 IPR000048 GO:0005515
Cla06g00255 509 Pfam IQ calmodulin-binding motif 130 146 IPR000048 GO:0005515
Cla06g00255 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 148 IPR027417 -
Cla06g00255 509 MobiDBLite consensus disorder prediction 402 425 - -
Cla06g00255 509 MobiDBLite consensus disorder prediction 17 38 - -
Cla06g00255 509 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00255 - - - csv:101207978 907.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00019 Cla-Chr5:255020 Cla06g00255 Cla-Chr6:3189292 6.88E-144 dispersed
Cla05g00859 Cla-Chr5:8507408 Cla06g00255 Cla-Chr6:3189292 1.13E-20 dispersed
Cla07g01437 Cla-Chr7:31605828 Cla06g00255 Cla-Chr6:3189292 4.27E-24 dispersed
Cla06g00255 Cla-Chr6:3189292 Cla09g01991 Cla-Chr9:37477381 4.72E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g624 . . . . . . Bma04g00927 . . Cmo17g00478 . . . . . . . . . . . . . . . . . . . . . . . Cone11ag0521 Cone18ag0985 . . . . . . . . . Bpe04g00965 . . . . . . Cma17g00507 . Car17g00469 . Cpe12g00436 . . . . . . . Cla06g00255 Cam06g0278 Cec06g0277 Cco06g0276 Clacu06g0268 Cmu06g0268 Cre06g1039 . . . Cme11g02263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g01991 . 1 479 IQD Protein Family AT3G52290 53.8 1.4e-103 373.6
Cla03g01150 . 73 480 IQD Protein Family AT3G22190 57.8 3.4e-97 352.4
Cla05g01841 . 1 438 IQD Protein Family AT2G26180 61.6 4.0e-119 425.2
Cla07g00945 . 106 281 IQD Protein Family AT2G33990 55.3 3.1e-48 189.1
Cla07g00945 . 109 283 IQD Protein Family AT3G15050 62.4 7.5e-55 211.1
Cla01g00741 . 121 476 IQD Protein Family AT5G13460 50.3 1.6e-73 273.9
Cla06g00255 . 1 509 IQD Protein Family AT4G00820 51.4 7.8e-115 411.4
Cla06g00255 . 1 509 IQD Protein Family AT1G01110 50.1 2.5e-110 396.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00255 Cla_Chr06 FPKM 9.897927 11.730589 14.711596 14.176905 4.120985 3.175137 3.677572 2.721216 2.665701 2.447116