Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00286 ATGTTGCACGCATCCATAGCAGAGAAGAGAAGGAAGCCCAAAGAAAGAGAGAGAAATAGAAATCCACAAGCAAACTCATCAGCTTCATCCAACAGAAGAACAACAAGAAGAAAGAAGGAAGGAAGAAGAAAGAAGGCATTTGAGTTTCAGACCTTCCAAACACAAAGAAAAAGATCTCAACCTTCAATCTCCATTTTTGACCCAACACTGGAGGATTTCGAGAAGATTTCTGGTTGGTTCATGAAGGCCATGCCCTTACCCTTCCCTTTTGAAGAGCTTCGTCCAAATGGGGTTTTGAATTTCACTTCTGTTTCTGATTCTCCGCCGCCGCCGACCTTGCTCCGCCGTCACAACCTCCGTGAGCACTGGAGTTGTACTGATAATACCAATCTGCTCAAAGAGATTTGCTATGTGGGTGCTGCCGAACCCACCTCTGTTCTCGATACTAGAAGAAGCCCAAGCCCTCCCACTTCCACTTCCACACTGTCTTCCTCTCTCGGCGGCGGCGGCGGTGGTGGTGGTACCGCCTCCACCGACACGACCGTGGCGGCGCCGCCGTCTTCTCTCCCTGAAAACCCTTCTCCTTTAGACAAATGCGGTGGCGGTGGCGGCCTTGGAATTGATGATTGGGAGAGCGTTTTGCCGGAATCCCCTGGTCAAGGTCCCTCCATTCTTGGGTTAATTATGAGCGATGTTGAAGATCCATCTCTTGGATTGAATAAGCTCCTGCAGAGCGGCGGTGGCGGTGGCGGTGGCGGTGGTTCTCATCTGGACTTGGAATTTTCCGTCGATCATGGGTTGGTCTTTGAAGCCAATACTCTCGCCGGTGAATCCATTGTCGACCCATCTCTTCAAGGCCCATCTTGCTCCGATTTCCACAATGCTAGACTCGCGGCGGCGGTGTCGAACTCAAACGCCATGTTTTCCGGTGTGTTTCAGAATCAAAATCAGATGGTGGAAGGCGTTGACGAGAAGCCACAGATTTTCAATTCTTCCCAAGTTGTGATGAATCAAAATCAAACTCAGTTCACTCAGAATCCAGCTCTGTTTATGCCTCTTCCTTATGCCTCCCCTGTCCAAGACCACCATCAGAACCACCACCACCACCACCTCCTTGGTGGTGCGCCGCCCGCAAAGCGGTTCAATTCCGGTTCAATTGGGCCAAATTATCCAGTGAAATCCCCATTTTTGGATTCGGGTCAAGAAAATTTCAATCGTAGACAACAACAACAGCCCCAACAAGTTCAGTTGTTTCCTCATCATTCCCATCATCACAACCTTCCTCAGCAGCAGCAGAGGCCATCCATGGCGGCCTTAGCAAAACAGAAAATGGTGAATGAAGATATAGCGAATCAACAACTCCAACAGGGCATTTCCGACCAGCTATTCAAGGCCGTAGAGCTGATCGAAACAGGCAATTCAGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCTTCCCCCATTGGGAAGCCCTTTCAAAGGGCTGCTTTCTACTTCAGGGAGGCCTTGCAATTGCTCCTTCAAAACCCTTCAAACCCATCCACCAATCCCAACCCTTCCCCTTTCTCCATCATTTTCAAAATCGCTGCTTACAAATCCTTCTCTGAAGTCTCCCCTGTTCTCCAATTTGCCAATTTCACCTCTAACCAAGCTCTCCTAGAAGCCTTCAATGGCTGCGATCGTGTTCACATCATCGATTTCGACATTGGTTACGGTGGCCAATGGGCTTCTCTAATGCAAGAACTTGCTTTGAGAAGTAACACCACTGGAGGAGGACCCCCATTTCTCAGAATCACTGCCTTTGCTTCTACTTCCACACACGATGATTTCGAGCTCGGTTTCACTCAAGAAAACCTCAAGAATTTCGCAAACGATCTCAACATTGGATTCGAGCTCGAAGTCGTAAATGTAGAGTGTCTGAATTCTGGGTCTTGGCCTCTGCCACTCAATGTCTCTGAAGATGAAGCAATTGCAGTGAATCTCCCTGTGGGTTCATTCTTCAATTACTCACTTTCATTGCCAATGATTCTCCGTTTCATAAAACATCTTAACCCCAAAATCGTAGTGTCTGTGGATCGAGGTTGTAGCCGTATGGACGCGCCATTCCCACATCGAGTAATCAACGCTCTTCATTCATACTCTGCTTTGCTTGAATCCATGGAAGCTGTAACTATGAATATGGATACCCAATTGAAAATTGAAAGGTACTTGGTGCAACCATGTATTGAGAAAGTGGTAACAAATCCTCAATGTTCAAACGAAAGGGTTCCTCCATGGAAATCAGTGTTCTTATCATCTGGGTTTTGTCCATTGACATTCAGTAATTTCACGGAATCACAGGCAGAGTGTCTGCTGCAGCGGACGCCGGTTCAAGGATTTCATATCGACAAGAGACACTCCTCGCTTGTTCTTTGCTGGCATCGGAAGGAGCTCGTTTCAATCTCTGCTTGGAGGTCTTAA 2472 47.94 MLHASIAEKRRKPKERERNRNPQANSSASSNRRTTRRKKEGRRKKAFEFQTFQTQRKRSQPSISIFDPTLEDFEKISGWFMKAMPLPFPFEELRPNGVLNFTSVSDSPPPPTLLRRHNLREHWSCTDNTNLLKEICYVGAAEPTSVLDTRRSPSPPTSTSTLSSSLGGGGGGGGTASTDTTVAAPPSSLPENPSPLDKCGGGGGLGIDDWESVLPESPGQGPSILGLIMSDVEDPSLGLNKLLQSGGGGGGGGGSHLDLEFSVDHGLVFEANTLAGESIVDPSLQGPSCSDFHNARLAAAVSNSNAMFSGVFQNQNQMVEGVDEKPQIFNSSQVVMNQNQTQFTQNPALFMPLPYASPVQDHHQNHHHHHLLGGAPPAKRFNSGSIGPNYPVKSPFLDSGQENFNRRQQQQPQQVQLFPHHSHHHNLPQQQQRPSMAALAKQKMVNEDIANQQLQQGISDQLFKAVELIETGNSVLAQGILARLNHQLSSPIGKPFQRAAFYFREALQLLLQNPSNPSTNPNPSPFSIIFKIAAYKSFSEVSPVLQFANFTSNQALLEAFNGCDRVHIIDFDIGYGGQWASLMQELALRSNTTGGGPPFLRITAFASTSTHDDFELGFTQENLKNFANDLNIGFELEVVNVECLNSGSWPLPLNVSEDEAIAVNLPVGSFFNYSLSLPMILRFIKHLNPKIVVSVDRGCSRMDAPFPHRVINALHSYSALLESMEAVTMNMDTQLKIERYLVQPCIEKVVTNPQCSNERVPPWKSVFLSSGFCPLTFSNFTESQAECLLQRTPVQGFHIDKRHSSLVLCWHRKELVSISAWRS 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3679742 3682398 - ClCG06G003050.1 Cla06g00286 274478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00286 823 MobiDBLite consensus disorder prediction 1 46 - -
Cla06g00286 823 MobiDBLite consensus disorder prediction 147 187 - -
Cla06g00286 823 ProSiteProfiles GRAS family profile. 449 822 IPR005202 -
Cla06g00286 823 MobiDBLite consensus disorder prediction 1 21 - -
Cla06g00286 823 Pfam GRAS domain family 460 822 IPR005202 -
Cla06g00286 823 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 135 822 IPR005202 -
Cla06g00286 823 PANTHER SCARECROW-LIKE PROTEIN 6 135 822 - -
Cla06g00286 823 MobiDBLite consensus disorder prediction 146 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00286 Cla-Chr6:3679742 Cla10g00261 Cla-Chr10:3189905 1.14E-162 dispersed
Cla06g00286 Cla-Chr6:3679742 Cla07g00872 Cla-Chr7:24281159 7.12E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61239 PF03514 GRAS 2.30E-98 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00286 - - csv:101214718 1278.08