Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00323 ATGGAGTCCAGTTCTTTTGATCAGAGCAGGGGTGTGCCCACCCATGGTGGTCGATACATTCAATACAATGTGTATGGGAATCTATTTGAAGTTCCTAGGAAGTATACTCCACCCATAAGGCCAGTTGGGAGAGGAGCTTATGGAATTGTATGTGCTGCTTTGAACTCAGAAACAAATGAAGAGGTTGCAATTAAGAAGGTTGGCAATGCATTTGACAATAGAATTGATGCTAAAAGGACGTTACGAGAAATCAAGCTTCTTCGACACATGGATCATGAAAATTGTCTATTAGCCTTCTCCCTATTGGAATTGCCATCTCCATATAAAATCACTGCTCTCAAAGATATTATAAGACCTCCTCAAAAGGAGAATTTCAATGATGTATACCTTGTTTATGAATTGATGGATACGGATCTAAATCAGATAATACGGTCCAACCAATCATTGACTGATGACCATTGCCGGTTCTTTCTGTACCAGTTGTTACGAGGGCTAAAATATGTACATTCTGCTAATGTTCTACACCGTGATTTGAAACCAAGCAATTTGTTCCTCAATGCAAATTGTGACCTAAAAATTGGAGACTTTGGGCTTGCAAGGACAACTTCTGAAACCGATTTTATGACCGAGTATGTTGTTACTCGGTGGTATCGTGCACCTGAATTGCTTCTTAATTGCTCAGAATACACTGGAGCAATCGATATCTGGTCTGTTGGCTGTATACTCGGTGAAATTATTCACAGACAACCATTGTTTCCTGGAAGAGACTATGTCCATCAGCTAAAACTTATCACTGAGCTCATTGGTTCACCCGATGACTCAAGTCTCGGATTCTTACGAAGTGACAATCCACGAAGATATTTTAGACATCTTCCTCACTTCCCCAAGCAACAGTTTTCCACTAGATTTCCCACCATGTCTCCTGCTGCCATTGACTTGCTGGAGAAGATGCTAGTCTTTGATCCTACTAAGCGCATTACAGTTGAGGAGGCTCTATGCCATCCATACTTGGCACCTCTTCATGATATCAATGAGGAGCCAGTATGTCCAAGGCCTTTCAGTTTTGATTTCGAGCAACCATCGTATACCGAAGAGAACATCAAGGAACTTGTATGGAGAGAATCTGTGAAGTTCAACCCCGATCCCGCTTTTTGA 1155 41.47 MESSSFDQSRGVPTHGGRYIQYNVYGNLFEVPRKYTPPIRPVGRGAYGIVCAALNSETNEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENCLLAFSLLELPSPYKITALKDIIRPPQKENFNDVYLVYELMDTDLNQIIRSNQSLTDDHCRFFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIIHRQPLFPGRDYVHQLKLITELIGSPDDSSLGFLRSDNPRRYFRHLPHFPKQQFSTRFPTMSPAAIDLLEKMLVFDPTKRITVEEALCHPYLAPLHDINEEPVCPRPFSFDFEQPSYTEENIKELVWRESVKFNPDPAF 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4131335 4136315 + ClCG06G003480.2 Cla06g00323 274515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00323 384 ProSiteProfiles Protein kinase domain profile. 36 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00323 384 ProSitePatterns Protein kinases ATP-binding region signature. 42 66 IPR017441 GO:0005524
Cla06g00323 384 Pfam Protein kinase domain 40 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00323 384 SMART serkin_6 36 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00323 384 SUPERFAMILY Protein kinase-like (PK-like) 39 344 IPR011009 -
Cla06g00323 384 Gene3D Phosphorylase Kinase; domain 1 19 374 - -
Cla06g00323 384 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 383 - -
Cla06g00323 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Cla06g00323 384 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 13 383 - -
Cla06g00323 384 Gene3D Transferase(Phosphotransferase) domain 1 135 364 - -
Cla06g00323 384 CDD STKc_TEY_MAPK 29 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00202 Cla-Chr3:2273884 Cla06g00323 Cla-Chr6:4131335 0 dispersed
Cla06g00323 Cla-Chr6:4131335 Cla07g00825 Cla-Chr7:22897719 5.00E-139 dispersed
Cla08g01021 Cla-Chr8:22915567 Cla06g00323 Cla-Chr6:4131335 0 transposed
Cla08g01463 Cla-Chr8:27534927 Cla06g00323 Cla-Chr6:4131335 2.21E-148 transposed
Cla01g00234 Cla-Chr1:2370951 Cla06g00323 Cla-Chr6:4131335 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80615 PF00069 Pkinase 2.30E-66 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00323 K20600 - csv:101215189 714.146