Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00331 ATGAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCCCTTCCTCTTCTTTTCACTGCCATCTCTCTCCGTCTCCATCTCTGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTACGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTTGATGTCAGCAACAACCGTTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGATATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGATACCATCGGAAACTCAACCGTCTCCGTTGTTTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATTGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCGAGCGCCAATGGCTTTATCGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCGTTTAATTATTTTGATGGCAAAGATGCAGCGTGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTGAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTTCAAGTTCTCCCGAAGTGCCAATGACTCCTGAAGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTTGATGTCAGCAACAACCGTTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGATATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGATACCATCGGAAACTCAACCGTCTCCGTTGTTTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATTGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCGAGCGCCAATGGCTTTATCGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAACTAACTTCACTTTCTCGTTTAATTATTTTGACGGCAAAGATGCAGCATGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTAAAGAAATCAATGGACTGTGGAAACTGTGGTAGTGGTGGTTTAGGTTCTCCCAAAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCACCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTGAATCGATCGTACCACCAGTTCATTCACCACCACCTCCCGTTCATTCACCACCACCCCCAGTTCATTCCCCACCACCACCAATTCATTCCCCACCACCTCCTGTTAACTCTCCTCCACCACCGGTCCATTCTCCTCCACCACCAGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCGCCAGTCCACTCCCCTCCACCTCCTGTTCACTCCCCACCACCACCTGTCTCTTCTCCTCCACCACCAGTTCACTCCCCACCTCCACCTGTGTACTCTCCACCACCACCGGTCCACTCCCCACCTCCTCCTATCTACTCTCCACCACCACCGATCCACTACCCACCTCCACCGGTCCACTCCCCACCTCCACCAGTCCATTCCCCACCACCACCGGTCCACTCCCCACCTCCACCGGTCTACTCTCCACCGCCACTGGTCTACTCCCCACCACCCCCGGTCCATTCTCCACCAACTCCTGTTTACTCTCCACCGCCACCAGTCCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACATCATCCTCCCCCCAAATATCGGCTTCCAATATGCATCACCACCTCCACCACAATTCCCTGGCTACTGA 2718 49.45 MRKQANHACFLLPFLFFSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFIGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLANFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSVDCGNCGGGSSSPEVPMTPEDPFDQSPSPRYRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFIGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLTNFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSMDCGNCGSGGLGSPKVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIVPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVNSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPPVYSPPPPVHSPPPPIYSPPPPIHYPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPLVYSPPPPVHSPPTPVYSPPPPVQSPPPPTASPPPDSSPPPSFEDIILPPNIGFQYASPPPPQFPGY 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4232665 4238543 + ClCG06G003538.1 Cla06g00331 274523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00331 905 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 800 900 - -
Cla06g00331 905 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 663 729 - -
Cla06g00331 905 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 416 669 - -
Cla06g00331 905 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 724 806 - -
Cla06g00331 905 SUPERFAMILY L domain-like 79 344 - -
Cla06g00331 905 MobiDBLite consensus disorder prediction 809 905 - -
Cla06g00331 905 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 7 402 - -
Cla06g00331 905 Gene3D Ribonuclease Inhibitor 69 238 IPR032675 -
Cla06g00331 905 PRINTS Proline rich extensin signature 664 680 - -
Cla06g00331 905 PRINTS Proline rich extensin signature 744 761 - -
Cla06g00331 905 PRINTS Proline rich extensin signature 725 741 - -
Cla06g00331 905 PRINTS Proline rich extensin signature 699 720 - -
Cla06g00331 905 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 663 729 - -
Cla06g00331 905 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 724 806 - -
Cla06g00331 905 SUPERFAMILY L domain-like 416 610 - -
Cla06g00331 905 Gene3D Ribonuclease Inhibitor 239 378 IPR032675 -
Cla06g00331 905 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 800 900 - -
Cla06g00331 905 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 7 402 - -
Cla06g00331 905 MobiDBLite consensus disorder prediction 659 796 - -
Cla06g00331 905 Gene3D Ribonuclease Inhibitor 414 636 IPR032675 -
Cla06g00331 905 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 416 669 - -
Cla06g00331 905 MobiDBLite consensus disorder prediction 671 796 - -
Cla06g00331 905 MobiDBLite consensus disorder prediction 809 884 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01769 Cla-Chr5:29552598 Cla06g00331 Cla-Chr6:4232665 2.56E-07 dispersed
Cla05g01996 Cla-Chr5:31740894 Cla06g00331 Cla-Chr6:4232665 2.89E-36 dispersed
Cla06g00331 Cla-Chr6:4232665 Cla06g01020 Cla-Chr6:21872214 3.61E-08 dispersed
Cla06g00329 Cla-Chr6:4222200 Cla06g00331 Cla-Chr6:4232665 3.42E-25 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00331 - - bhj:120092879 759.985