Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00331 ATGAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCCCTTCCTCTTCTTTTCACTGCCATCTCTCTCCGTCTCCATCTCTGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTACGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTTGATGTCAGCAACAACCGTTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGATATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGATACCATCGGAAACTCAACCGTCTCCGTTGTTTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATTGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCGAGCGCCAATGGCTTTATCGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCGTTTAATTATTTTGATGGCAAAGATGCAGCGTGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTGAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTTCAAGTTCTCCCGAAGTGCCAATGACTCCTGAAGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTTGATGTCAGCAACAACCGTTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGATATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGATACCATCGGAAACTCAACCGTCTCCGTTGTTTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATTGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCGAGCGCCAATGGCTTTATCGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAACTAACTTCACTTTCTCGTTTAATTATTTTGACGGCAAAGATGCAGCATGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTAAAGAAATCAATGGACTGTGGAAACTGTGGTAGTGGTGGTTTAGGTTCTCCCAAAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCACCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTGAATCGATCGTACCACCAGTTCATTCACCACCACCTCCCGTTCATTCACCACCACCCCCAGTTCATTCCCCACCACCACCAATTCATTCCCCACCACCTCCTGTTAACTCTCCTCCACCACCGGTCCATTCTCCTCCACCACCAGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCGCCAGTCCACTCCCCTCCACCTCCTGTTCACTCCCCACCACCACCTGTCTCTTCTCCTCCACCACCAGTTCACTCCCCACCTCCACCTGTGTACTCTCCACCACCACCGGTCCACTCCCCACCTCCTCCTATCTACTCTCCACCACCACCGATCCACTACCCACCTCCACCGGTCCACTCCCCACCTCCACCAGTCCATTCCCCACCACCACCGGTCCACTCCCCACCTCCACCGGTCTACTCTCCACCGCCACTGGTCTACTCCCCACCACCCCCGGTCCATTCTCCACCAACTCCTGTTTACTCTCCACCGCCACCAGTCCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACATCATCCTCCCCCCAAATATCGGCTTCCAATATGCATCACCACCTCCACCACAATTCCCTGGCTACTGA 2718 49.45 MRKQANHACFLLPFLFFSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFIGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLANFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSVDCGNCGGGSSSPEVPMTPEDPFDQSPSPRYRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFIGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLTNFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSMDCGNCGSGGLGSPKVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIVPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVNSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPPVYSPPPPVHSPPPPIYSPPPPIHYPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPLVYSPPPPVHSPPTPVYSPPPPVQSPPPPTASPPPDSSPPPSFEDIILPPNIGFQYASPPPPQFPGY 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4232665 4238543 + ClCG06G003538.1 Cla06g00331 274523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00331 905 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 800 900 - -
Cla06g00331 905 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 663 729 - -
Cla06g00331 905 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 416 669 - -
Cla06g00331 905 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 724 806 - -
Cla06g00331 905 SUPERFAMILY L domain-like 79 344 - -
Cla06g00331 905 MobiDBLite consensus disorder prediction 809 905 - -
Cla06g00331 905 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 7 402 - -
Cla06g00331 905 Gene3D Ribonuclease Inhibitor 69 238 IPR032675 -
Cla06g00331 905 PRINTS Proline rich extensin signature 664 680 - -
Cla06g00331 905 PRINTS Proline rich extensin signature 744 761 - -
Cla06g00331 905 PRINTS Proline rich extensin signature 725 741 - -
Cla06g00331 905 PRINTS Proline rich extensin signature 699 720 - -
Cla06g00331 905 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 663 729 - -
Cla06g00331 905 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 724 806 - -
Cla06g00331 905 SUPERFAMILY L domain-like 416 610 - -
Cla06g00331 905 Gene3D Ribonuclease Inhibitor 239 378 IPR032675 -
Cla06g00331 905 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 800 900 - -
Cla06g00331 905 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 7 402 - -
Cla06g00331 905 MobiDBLite consensus disorder prediction 659 796 - -
Cla06g00331 905 Gene3D Ribonuclease Inhibitor 414 636 IPR032675 -
Cla06g00331 905 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 416 669 - -
Cla06g00331 905 MobiDBLite consensus disorder prediction 671 796 - -
Cla06g00331 905 MobiDBLite consensus disorder prediction 809 884 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00331 - - - bhj:120092879 759.985
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01769 Cla-Chr5:29552598 Cla06g00331 Cla-Chr6:4232665 2.56E-07 dispersed
Cla05g01996 Cla-Chr5:31740894 Cla06g00331 Cla-Chr6:4232665 2.89E-36 dispersed
Cla06g00331 Cla-Chr6:4232665 Cla06g01020 Cla-Chr6:21872214 3.61E-08 dispersed
Cla06g00329 Cla-Chr6:4222200 Cla06g00331 Cla-Chr6:4232665 3.42E-25 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g00515 . 32 363 Leucine-rich Repeat extension Gene Families AT1G62440 63.4 3.7e-49 193.7
Cla11g00230 CCT 153 498 Leucine-rich Repeat extension Gene Families AT1G62440 63.5 1.6e-47 188.3
Cla07g00233 . 27 374 Leucine-rich Repeat extension Gene Families AT1G62440 56.7 4.7e-44 176.8
Cla05g01996 . 67 263 Leucine-rich Repeat extension Gene Families AT1G62440 60.4 1.7e-41 168.3
Cla06g01020 CCT 61 233 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 8.4e-41 166.0
Cla11g00230 CCT 118 502 Leucine-rich Repeat extension Gene Families AT4G13340 75.9 1.8e-72 271.2
Cla06g01020 CCT 15 405 Leucine-rich Repeat extension Gene Families AT4G13340 74.3 1.5e-66 251.5
Cla05g00515 . 18 365 Leucine-rich Repeat extension Gene Families AT4G13340 69.6 5.2e-56 216.5
Cla05g01996 . 67 257 Leucine-rich Repeat extension Gene Families AT4G13340 67.0 4.6e-44 176.8
Cla07g00233 . 38 375 Leucine-rich Repeat extension Gene Families AT4G13340 62.5 1.0e-43 175.6
Cla06g00331 . 18 221 Leucine-rich Repeat extension Gene Families AT4G13340 54.9 2.6e-39 161.0
Cla11g00230 CCT 118 500 Leucine-rich Repeat extension Gene Families AT3G24480 74.5 1.2e-77 287.7
Cla06g01020 CCT 24 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 8.9e-73 271.6
Cla05g00515 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 66.7 1.9e-54 210.7
Cla07g00233 . 45 396 Leucine-rich Repeat extension Gene Families AT3G24480 58.5 2.7e-45 180.3
Cla05g01996 . 67 257 Leucine-rich Repeat extension Gene Families AT3G24480 65.4 3.5e-45 179.9
Cla06g00331 . 21 395 Leucine-rich Repeat extension Gene Families AT3G24480 50.1 2.6e-40 163.7
Cla05g00515 . 15 364 Leucine-rich Repeat extension Gene Families AT3G22800 72.7 7.2e-72 268.5
Cla07g00233 . 45 374 Leucine-rich Repeat extension Gene Families AT3G22800 64.7 2.0e-50 197.2
Cla11g00230 CCT 165 498 Leucine-rich Repeat extension Gene Families AT3G22800 64.0 1.7e-41 167.5
Cla06g01020 CCT 73 401 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 8.8e-38 155.2
Cla06g01020 CCT 47 405 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 3.0e-40 163.3
Cla11g00230 CCT 139 498 Leucine-rich Repeat extension Gene Families AT5G25550 60.5 7.4e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00331 Cla_Chr06 FPKM 1.257862 1.234682 1.405816 2.204293 2.505051 1.522257 2.855629 2.900927 1.354252 2.09126