Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00340 ATGGAAGAGATAGGAGTAGATGAAAATTTCCCGCCATGTAAGAAGGTGGCCGGCGAGGTGCGCCGAAACTTTTCCAAACAACACGGCTGCTGGGTTTGTCGGCCGACGGCGATAGAGAGGGTGGAGGAAGCGCCGGCGTCGACAGAGAAAGCGGAGGCGCAGACGGGAGAAAGAGATAGGGTTTACATTACACTCAGTTTACCGGACCACCGGACTGGATTGGATGTCAATTTGGCTAAAACGGTGGATCTTGGAAGAATGTCTAAAGAAGAAGATCCAAAAGCTAACAGAAGGACAACCCGGTCCTCTTCAGCAGCTGTTCTAAGGGATTCTGGTGAAATAAAGAAGAAATGTGATCCACATATTCCAACTCTTAATGATCTTGTTTTCGGAGAAGATACCATTAGTAAGGAAGATCTCCTGTCTAGTTTTCCTGGACGTCATACTCAAATTCTTGAACTCCTTAACCTTTTAGGTCCCCTGAATTCTCCCATGCTTCCCCTCTTTGTTTATGGTGGCACGTCGGCAGGAAAAACCAGTGTCATTCTACAAATATTTCGTCATCTCAACCGTCCTTTTGTCTACTCAAGCTGTCGTACTTGTTATAGTTTGCGAACTCTGTTTGAGTGTATCTTGAATCAGTTATTACTTCATCAGAAAGATGCAGATAATGGATATTTGAGTGCAAAACGCTGTGAAAAACCATCAGACTTTGTTAACTTTCTTCGTGAAGCCTTAGTTAAAGTTGTGAAAACTCTCCAGGGGAACCCAGGAAAGTTAGGCACCAAGAAGTTGACAGGACAAGAGCATGGGCATATGATCTACCTGATTTTTGACAACTTGGAACTTGTTAGAGACTGGGACAAGAGTTCAAGCATATTGCCTTTTCTATTTAATCTCCATGAAGTTTTAAACATGAATGAGGTTGGATTTCTCTTCATCAGTAATACTTCTCCAGACGCATACTATTCAAATATGGGTTACTTGGAGCCCATCCCTGTTTATTTCTCTGAGTACACAGAAGATGATCTTCGTAAAATTTTTATGAGGAATCAAGCCAATCAAGAGATGTATTCTTCCTTTCTGAGTGTTGTATTGGGGCCATTCTATAGAATTACTAGACAAGTGAATGAGTTATCCTTAACGCTTTCATCATTGTACAAAACATACTGTGAAGCTTCAGATGATCTGAACAATGTTCCCAACGAGTCCAGCAAGAGGACACGTTTCAGTCATTTTCAGCCACATATTGCCCCTGCTTTGAATCAGATATTTAAAATTTCATCTCCACTTTCCGAGGTTAATAATTTGAAGGAAGCAAAGAGAAAAGGTGGTAGTATGAAGTTTAGCGGGTGTGACTCTTCTGAGCACTTGGATTTTCACATGTCTACTTCAGCAAAATATCTTCTTCTTTCAGCCTTCCTTGCTTCAAGAAACCCAGCTACACTTGATGCATCACTGTTTGATTCAACTGGGGGCACTAGTAGTCGAAAAAAGAGGAAGAGGCCATCTGAAAAATCAATTGAGCAGAAGGAAATTTCAGAACAGGAGTTGCTTATGAAAGGACCTGGAACTTTTCCATTGGAGAGATTGCTTGCAATATTTCAGTGCATTACGTCTGTGGCAGAAATCTCCCTTGAAGACGAGCAAGGAAATGTTTTAATGGAAAGTCAAAATGAGGATAGTGAACTCATGTCTGATGTTCTCCTGCAACTTTCCAGCCTCTGCAATGCAAACTTTGTGGTTAAAGGAGGAAGTTGCCCACTAGAAGGTTCAACTCGATATCGCTCTACAGTGTCTGAAGATATGGCTTTGAAGGTGGCAAGGAGTATTAAGTTCCCCCTGTCCAAGTACATGTACAGAAGATAA 1869 41.79 MEEIGVDENFPPCKKVAGEVRRNFSKQHGCWVCRPTAIERVEEAPASTEKAEAQTGERDRVYITLSLPDHRTGLDVNLAKTVDLGRMSKEEDPKANRRTTRSSSAAVLRDSGEIKKKCDPHIPTLNDLVFGEDTISKEDLLSSFPGRHTQILELLNLLGPLNSPMLPLFVYGGTSAGKTSVILQIFRHLNRPFVYSSCRTCYSLRTLFECILNQLLLHQKDADNGYLSAKRCEKPSDFVNFLREALVKVVKTLQGNPGKLGTKKLTGQEHGHMIYLIFDNLELVRDWDKSSSILPFLFNLHEVLNMNEVGFLFISNTSPDAYYSNMGYLEPIPVYFSEYTEDDLRKIFMRNQANQEMYSSFLSVVLGPFYRITRQVNELSLTLSSLYKTYCEASDDLNNVPNESSKRTRFSHFQPHIAPALNQIFKISSPLSEVNNLKEAKRKGGSMKFSGCDSSEHLDFHMSTSAKYLLLSAFLASRNPATLDASLFDSTGGTSSRKKRKRPSEKSIEQKEISEQELLMKGPGTFPLERLLAIFQCITSVAEISLEDEQGNVLMESQNEDSELMSDVLLQLSSLCNANFVVKGGSCPLEGSTRYRSTVSEDMALKVARSIKFPLSKYMYRR 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4319210 4328736 + ClCG06G003620.2 Cla06g00340 274532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00340 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 352 IPR027417 -
Cla06g00340 622 MobiDBLite consensus disorder prediction 494 510 - -
Cla06g00340 622 Pfam Origin recognition complex (ORC) subunit 5 C-terminus 334 619 IPR020796 GO:0000808|GO:0005634|GO:0006260
Cla06g00340 622 Pfam AAA ATPase domain 144 303 IPR041664 -
Cla06g00340 622 Gene3D - 144 323 IPR027417 -
Cla06g00340 622 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 5 136 621 IPR020796 GO:0000808|GO:0005634|GO:0006260
Cla06g00340 622 MobiDBLite consensus disorder prediction 85 107 - -
Cla06g00340 622 MobiDBLite consensus disorder prediction 486 510 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00340 K02607 - csv:101223023 957.592