Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00344 ATGGCGGGTAGCAGTGGAGAAGATGTGGTTTATGTGGCTGTGGGAAGTGATTTAAAGGAGTGTAAATTGAATTTGGTCTATGCTATAAAGCACTCCGGTGGGAGGAGGCTTTGCATCCTTCATGTTCATGAGCCAGCAAAGTGGATTCCAATCTTGGGAACAAAATTTTTGGCAAGTTCTATGAAAGAAGAGGAAGTAAATGCATACCGCGAACTTGAGAGGCAGGATGCGAATAAGATTCTTGATGGATTCCTTCTCCTCTGTCACCAAGCTGGGGCTCAAGCAGAGAAACTTTATTCTGAATCCGACAAAATTAAGAAGGGAATTGTCGAACTCATCTCCCGTCATGGAATTAGAAGGCTTGTTATGGGCGCAGCAGCGGACAAGTATCACTCAAGAATGTTAGTTACTCCATTTGCACATACCATGCACTCTGCTCTGTATGGTCCACAACTGAAGACTCTGTCGGATGAAATGATGGATATACTGTTCATCGTGAGGTTACCAGTCTTTGTGATGGTTCCATCGTGGAAAAAAATGACAAAAATCAGGTCGAGGAAAGCTATGTATGTTCACCTGAATGCACCAGCTTTCTGTCAAATTCAATTTGTTTGCAACGGGCAGTTAATTCGCATTAGGGAAGCTTGTCCACACGAAGCTCATGCAGATATCTTACCACCATCACCTCAGTCACAGAACATCAACGAGGCAAGTTGGAGACCAGTGCAGTCTGGCCAATTTAATGGGAGAATAATCGACAGTCCATCAATTGTTATGGAAAGGCTTACAATTTCAGAGACCATTTCAAATACAAGTGGGACTTGGAGCGCTTTTGAGCGTTCATATTCAACAAGTTCATCTAGTGGTTATATGGATGTTGCATCTTCAAGGACTGAGGAAGATGCGTATGAACTAGGATTGAATTCTCCTCATCTGTTGACAAATTTTGCTCCTAACTCCTCTCCTCCCCATTTATCGGGATTCCAGCAAGATGGCAGTGCTGATGATAGTCTTTATATTCAACTTGAAAAGGCGATAACCGATGCAGCAAATGCCAGGCGAGAAGCCTTTAGGGAGGCATTGAAGCGAGCGAAGGCTGAAAAGGAACTTGGCGATGCTATTCGCAGGGCTAAAGTTTCTGAAGCCTTGTATGCTGAAGAGTCAAGAGTAAGGAAAGAAATTGAAGAAGCGCGGTCAAAAGAAAGAGAAGAACTTGACAATGTGAAGGACCAAGTAAATGAAATGATGGAGGAGCTCCAAATCGCCCGAAACAAGGGATTGACATTAGAGAACCAAATTGCAGAATCTGATGAGATGGTGAAGGAGTTGGAGCAGAAGATCCTCTCAGCTATAGAACTGCTGCATAATTACAAAAATGATCGAGATGAATTGCTGAAGCAACGAGATGAAGCACTCAAAGAATTGGATGACATAAGGACAAGACAAGTAGACGCCAGAATTCAACATAATGCTCAATTACTCTCTGAGTTCTGTTTCTCAGAAATTGCAGAAGCGACCCGGAAATTCGATCCTTCCCTTAAGATTGTAGAGGGTACACATGGAAGCATGTATAAAGGTCTGCTTTATAACACTGAGGTTTCCATAAAAATGCTCCGTTCTCATAACTTGCAGAACCCAGTAGAGTTTCAACGTGAGGTTGATGTATTGAGTAAGCTGAGACATCCCAATATTGTCACGCTCATTGGAGTCTGTCCAGAGGCTTGTATTCTTGTTTATGACTATTTTCCTAATGGAAATTTAGAAGATAGGCTAGCTTGCAAGGACAATTCTTCTCCATTATCATGGAAAACTCGGATACGTATTGCTACAGATTTATGCTCGGCTCTTATATTTATCCATTCGAATAAAATTTGCAAGATCATTCATGGTGACGTGAAGCCTTCACATGTACTATTAGATGCAAATTACGTTCCCAAACTTGCTGGATTTGGAACTTGTCAGTTTTTGCCTCATGATGAAAAGTCGAGTTACAATGAGAATTTATCTGCCGTATACGAAGTGAAGGGCAATCATGAATTTCCTCTCACGACAAAGTTGGACGTTTTTTCATTTGGCATGGTATTGTTAAGTTTGTTAACTGGACAATCATACTTGAGATTGAAAGAAGATGTCCAGTTCGCCGTAGAGGAAAGGAAATTGAAAGATGTTTTGGATCCACGAGCAGGGGACTGGCCATTCGTGCAGGCCGAGCAGTTGGCCCAGTTGGCATTGAGGTGTTGCAATGAAAATAGTATGTACAGACCAGACCTTGTGTCTGATGTGTGGAGAGTACTTGAGCCAATGAGGGCTTCTTGTGGAGGTTCACTATCAGTATGCCTAAGCTTTGGGGACCAGCAAGTGCAACCTCCTCCTTATTTCATATGTCCTATTTTTCAGGAAGTCATGGAGAATCCTCATGTAGCAGCTGACGGGTTTACCTATGAGGCAGAGGCTTTGAGAGGATGGTTAGACAGTGGACACGACACTTCACCGATGACGAACCTAAGGCTCGATCACCAAAATCTCGTCCCTAACCGTGCTCTTCGTTCTGTAATTCAAGAATGGTTGCAACAGCACTAG 2580 42.79 MAGSSGEDVVYVAVGSDLKECKLNLVYAIKHSGGRRLCILHVHEPAKWIPILGTKFLASSMKEEEVNAYRELERQDANKILDGFLLLCHQAGAQAEKLYSESDKIKKGIVELISRHGIRRLVMGAAADKYHSRMLVTPFAHTMHSALYGPQLKTLSDEMMDILFIVRLPVFVMVPSWKKMTKIRSRKAMYVHLNAPAFCQIQFVCNGQLIRIREACPHEAHADILPPSPQSQNINEASWRPVQSGQFNGRIIDSPSIVMERLTISETISNTSGTWSAFERSYSTSSSSGYMDVASSRTEEDAYELGLNSPHLLTNFAPNSSPPHLSGFQQDGSADDSLYIQLEKAITDAANARREAFREALKRAKAEKELGDAIRRAKVSEALYAEESRVRKEIEEARSKEREELDNVKDQVNEMMEELQIARNKGLTLENQIAESDEMVKELEQKILSAIELLHNYKNDRDELLKQRDEALKELDDIRTRQVDARIQHNAQLLSEFCFSEIAEATRKFDPSLKIVEGTHGSMYKGLLYNTEVSIKMLRSHNLQNPVEFQREVDVLSKLRHPNIVTLIGVCPEACILVYDYFPNGNLEDRLACKDNSSPLSWKTRIRIATDLCSALIFIHSNKICKIIHGDVKPSHVLLDANYVPKLAGFGTCQFLPHDEKSSYNENLSAVYEVKGNHEFPLTTKLDVFSFGMVLLSLLTGQSYLRLKEDVQFAVEERKLKDVLDPRAGDWPFVQAEQLAQLALRCCNENSMYRPDLVSDVWRVLEPMRASCGGSLSVCLSFGDQQVQPPPYFICPIFQEVMENPHVAADGFTYEAEALRGWLDSGHDTSPMTNLRLDHQNLVPNRALRSVIQEWLQQH 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4371393 4379084 - ClCG06G003660.2 Cla06g00344 274536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00344 859 Coils Coil 384 481 - -
Cla06g00344 859 Gene3D Phosphorylase Kinase; domain 1 479 581 - -
Cla06g00344 859 Pfam U-box domain 790 859 IPR003613 GO:0004842|GO:0016567
Cla06g00344 859 CDD STK_N 9 207 - -
Cla06g00344 859 CDD RING-Ubox_WDSUB1_like 793 834 - -
Cla06g00344 859 SUPERFAMILY Protein kinase-like (PK-like) 493 763 IPR011009 -
Cla06g00344 859 ProSiteProfiles U-box domain profile. 788 859 IPR003613 GO:0004842|GO:0016567
Cla06g00344 859 SUPERFAMILY RING/U-box 784 859 - -
Cla06g00344 859 Gene3D Transferase(Phosphotransferase) domain 1 583 767 - -
Cla06g00344 859 SMART Ubox_2 792 855 IPR003613 GO:0004842|GO:0016567
Cla06g00344 859 ProSiteProfiles Protein kinase domain profile. 509 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00344 859 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 141 - -
Cla06g00344 859 PANTHER OS02G0152300 PROTEIN 178 855 - -
Cla06g00344 859 Pfam Protein kinase domain 514 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00344 859 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 787 859 IPR013083 -
Cla06g00344 859 Coils Coil 347 367 - -
Cla06g00344 859 PANTHER OS02G0152300 PROTEIN 7 138 - -
Cla06g00344 859 Gene3D HUPs 8 146 IPR014729 -
Cla06g00344 859 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 7 138 - -
Cla06g00344 859 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 178 855 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00164 Cla06g00344 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00891 Cla-Chr5:8805629 Cla06g00344 Cla-Chr6:4371393 6.04E-154 dispersed
Cla06g00344 Cla-Chr6:4371393 Cla11g00152 Cla-Chr11:1806239 7.02E-74 dispersed
Cla01g01791 Cla-Chr1:32853761 Cla06g00344 Cla-Chr6:4371393 3.22E-75 transposed
Cla02g01970 Cla-Chr2:34762145 Cla06g00344 Cla-Chr6:4371393 2.79E-123 transposed
Cla05g00164 Cla-Chr5:1511538 Cla06g00344 Cla-Chr6:4371393 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80616 PF00069 Pkinase 3.00E-28 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00344 - - csv:101202751 1375.15