Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00354 ATGGATCGAAGGGATCCGATGGCGTTATCAGGGTCGCAATCTTTCTATATGCAGAGGGGAATTAGCAACTCTGGCTCTGGAGCACAGGGTTTGCGTTCCTCTACTAACCCAAATGTGGCATTTCAGACCAACACTGGAGGAAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCCATTTCACCTTATGGTGGCAATGTGGGGGCTCAATCTGGTGGAGTAGTTGCCAGTGAGCCTGTGAAACGCAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTGTCTCCCTCCCCTTCTGCTGTAAATCCAGCCACTGTAGCTTCTTCCCCAAAGCGGGGAAGGGGACGGCCTCCCGGCTCTGGAAAGAAGCAACAAATGGCTTCTCTTTGTGAAACACTTTCTGGGTCAGCTGGCATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATGTTGGTGCCAAGATTATGTCATTTTCACAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTTACTCTTCGTCAGCCTTCGACTTCGGGAGGCACAGTCACATATGAGGGGCGTTTCGAGATAATATGTCTGTCGGGCTCTTATGCTCTTGGAGAAGTTGCTGGTTCTAGGAACCGCACTGGTGGTCTGAGTGTCTCCCTTGCTAGCCCTGATGGGCGCGTTATCGGTGGTGGAGTAGGAGGAGCGCTTATCGCAGCAACCCCGGTTCAGGTGATAGTAGGGAGTTTCATGTGGGGCAGTTCGAAGTCAAAGTACAAGAAGAGGGAAGCTGTTGAAGGCGTGATCGACTCGGATCATCAGTCGGTAGATCATGCAGTTGCAATCGCAAACGTGCAGCAGAATCAGAATCTGACTCCAACGTCCTCAGTTAGCATGTGGCCATCCTCGCAGTCTCTGGACATGCGCAATGCTCACATTGACATCGATCTGATGCGCGGTTGA 1005 51.44 MDRRDPMALSGSQSFYMQRGISNSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGLPMDPNPAISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPATVASSPKRGRGRPPGSGKKQQMASLCETLSGSAGMGFTPHVITIGIGEDVGAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGEVAGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAVEGVIDSDHQSVDHAVAIANVQQNQNLTPTSSVSMWPSSQSLDMRNAHIDIDLMRG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4478870 4482823 + ClCG06G003810.1 Cla06g00354 274546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00354 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
Cla06g00354 334 SMART AT_hook_2 119 131 IPR017956 GO:0003677
Cla06g00354 334 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Cla06g00354 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 325 - -
Cla06g00354 334 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Cla06g00354 334 MobiDBLite consensus disorder prediction 11 52 - -
Cla06g00354 334 MobiDBLite consensus disorder prediction 98 114 - -
Cla06g00354 334 CDD DUF296 150 264 IPR005175 -
Cla06g00354 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Cla06g00354 334 Gene3D - 151 283 - -
Cla06g00354 334 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677
Cla06g00354 334 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677
Cla06g00354 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 325 IPR039605 GO:0003680
Cla06g00354 334 MobiDBLite consensus disorder prediction 1 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00354 Cla-Chr6:4478870 Cla05g00810 Cla-Chr5:7912041 8.25E-55 dispersed
Cla02g01665 Cla-Chr2:31493053 Cla06g00354 Cla-Chr6:4478870 4.50E-39 transposed
Cla02g02125 Cla-Chr2:36295670 Cla06g00354 Cla-Chr6:4478870 5.36E-24 transposed
Cla08g00927 Cla-Chr8:21810985 Cla06g00354 Cla-Chr6:4478870 1.47E-63 transposed
Cla11g01851 Cla-Chr11:32052269 Cla06g00354 Cla-Chr6:4478870 4.77E-67 transposed
Cla01g00271 Cla-Chr1:2803952 Cla06g00354 Cla-Chr6:4478870 2.14E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00354 - - csv:101203138 619.772