Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00386 ATGGCCGCGGCCGCTTCTCTGGGGAACCCTGCTCTTACCAGAATCACCTTACTTGGTCGTATAAACAAACATCACTTGACTTCACCTACAGCTCAGAAGATGACGCTGTGTCTCTGCGCCATGGACTCCAAATCAGTAGGTATTGGAGGTGATGTATTTTCTGTGACATCGTCGGCCAAGTCCGGAGTTGATTATCTTGGACAGAGCACTAAAGGAGATATGAATCTCAAACTCGAACATCTTGAGGCTTTTGGCGTAGATGGTGAAGAAACCTTAGAAGGTCCAATCGAGGAAGTTGCGAGGTTGGAGGCACATGAAGCCGAGGATCTCCTTAGAGATTTGGGAATACCGAGTCCTTCATCAAGAAATTCACCACATGGTATATTTTGTAGCCGAACATTGAATCTTCGATCAATCAGTGCAATTGGATACGACATGGACTACACTTTGATGCATTATAATGTCATGGCTTGGGAGGGAAGAGCGTACGACTACTGTATGGAAAACTTAAAGAACATGGGTTTCCCTGTCGATGGACTCGCATTTGACCCAGACTTGGTTATAAGAGGCCTTGTCATAGACAAAGAGAGAGGTAACTTAGTAAAGGCTGATCGTTTTGGTTATATAAAAAGAGCAATGCATGGAACAAACATGCTGTCTACTCGAGATGTAAGTGAGATTTACGGGAGGGAATTGGTGGATCTGCGTAAGGAGAATCGATGGGAGTTCCTAAATACGCTATTCTCTGTATCGGAGGCTGTTGCCTATATGCAGTCAGTTGCTTTGCTTAGAGTTCCTAAAGAATTAAGAATTCCTTTGCCTCCCGTTGTTGAGATGGTAGACAGATTGGACGATGGAGCCATAGGAGCAGCACTTGGTCCACTTGATTATAAAGGACTCTACAAGGCTGTTGGGAAAGCACTATTCAGGGCACATGTCGAGGGTCAGCTTAAGAGTGAGATAATGTCTAATCCTGAATTATTTGTCGAGCCAGACCCTGTACTACCATTGACCCTATTGGACCAAAAAGAGGCTGGAAAAAAGCTTTTGCTTATCACCAACTCGGATTATCATTACACAAATAAAATGATGCAGCATTCTTTTGATAGATTTCTTCCAAATGATATGGGATGGAGAGATCTATTTGATATTGTAATAGTCTCAGCAAGAAAGCCAGAGTTTTTCCAAATGTCTCATCCATTGTACGAGGTGGTGACTGGTGAGGGTCTCATGCGCCCGTGCTTTAAGGCAGTTGCAGGCTTTTGCTCTCCAAGATTTATCAGAGCTAGACTTGGACCTCTGCCCCTGGTAGAATTCAAGAACTTGGATGTGGGGGGCTTGTACTCTGGTGGTAGCGCACAAATGGTTGAGAATTCTTTAAACATTCATGGTGATGAGATATTGTATGTAGGTGATCATATTTATACCGATGTAAGCCAATCTAAAGTACACTTGCGCTGGAGAACAGCATTAATTCTACGAGAATTGGAAGAAGAGTATAGTGCTTTGATTCATAGTCGTGGTCATCGTGGATCTCTCATTGAGCTTATAAATCAAAAGGAAGTTGTGGGGGATCTCTTCAATCAACTTCGGCTTGCTTTGCAAAGGCGTAGTCAAGGTCGTCCTGCTCAAACCCTTGCAGCGACTAACATGGATGATGAGGAACTCACTGAAAGCATGCAAAAGCTGCTCATAGTCATGCAAAGATTAGACCAGAAAATTGCTCCGATGCTAGAAGCAGATGGAGAGCTATTCAACAAAAGGATTTGCACTTGTCTTCCTACTGCTACATTCTTGTTCTCATCTCGAGACTATCGGTGGGGTTTTCTTTCCCGTGCAGGCCTATGGGATAAAAGCCATTTGATGAGACAAATTGAGAAGTATGCGGATATATACACTTCAAGGGTTTCGAACTTCTTACACTACACGCCATTCACGTATTTCCGCTCTCAAGAACAGACATTGGCTCATGACTCATACTCGTTCTACTGTTCCAATGATGAAACTACTATTGACAGATAA 2022 43.32 MAAAASLGNPALTRITLLGRINKHHLTSPTAQKMTLCLCAMDSKSVGIGGDVFSVTSSAKSGVDYLGQSTKGDMNLKLEHLEAFGVDGEETLEGPIEEVARLEAHEAEDLLRDLGIPSPSSRNSPHGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMENLKNMGFPVDGLAFDPDLVIRGLVIDKERGNLVKADRFGYIKRAMHGTNMLSTRDVSEIYGRELVDLRKENRWEFLNTLFSVSEAVAYMQSVALLRVPKELRIPLPPVVEMVDRLDDGAIGAALGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSNPELFVEPDPVLPLTLLDQKEAGKKLLLITNSDYHYTNKMMQHSFDRFLPNDMGWRDLFDIVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKAVAGFCSPRFIRARLGPLPLVEFKNLDVGGLYSGGSAQMVENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALILRELEEEYSALIHSRGHRGSLIELINQKEVVGDLFNQLRLALQRRSQGRPAQTLAATNMDDEELTESMQKLLIVMQRLDQKIAPMLEADGELFNKRICTCLPTATFLFSSRDYRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHYTPFTYFRSQEQTLAHDSYSFYCSNDETTIDR 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4744245 4757676 + ClCG06G004150.2 Cla06g00386 274578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00386 673 SUPERFAMILY HAD-like 125 660 IPR036412 -
Cla06g00386 673 Gene3D - 309 522 IPR023214 -
Cla06g00386 673 PANTHER HAD-SUPERFAMILY HYDROLASE, SUBFAMILY IG, 5'-NUCLEOTIDASE 277 419 - -
Cla06g00386 673 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 128 510 IPR008380 -
Cla06g00386 673 PANTHER HAD-SUPERFAMILY HYDROLASE, SUBFAMILY IG, 5'-NUCLEOTIDASE 443 666 - -
Cla06g00386 673 PANTHER HAD-SUPERFAMILY HYDROLASE, SUBFAMILY IG, 5'-NUCLEOTIDASE 44 264 - -
Cla06g00386 673 Pfam 5' nucleotidase family 128 659 IPR008380 -
Cla06g00386 673 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 277 419 IPR008380 -
Cla06g00386 673 CDD HAD_cN-II 129 496 - -
Cla06g00386 673 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 44 264 IPR008380 -
Cla06g00386 673 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 443 666 IPR008380 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00386 - - - csv:101205329 1139.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00386 Cla-Chr6:4744245 Cla08g01488 Cla-Chr8:27744523 5.31E-59 dispersed
Cla06g00386 Cla-Chr6:4744245 Cla06g01269 Cla-Chr6:25941289 1.41E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g266 Blo01g00017 . . . . . . Bma05g00981 . . . . . . . . . . . . . . . . Cla06g00386 . Cec06g0417 . . . . . Cone15ag0684 . . . . . . . . . . Bpe05g00790 . . . Sed11g1035 . . . . . . Cpe12g00353 . Bhi12g02006 Tan06g2823 Cmetu03g0819 Lac11g1075 Hepe03g0003 . Lcy12g0924 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012890 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00386 Cla_Chr06 FPKM 0.0 0.0 0.0 0.0 0.34371 0.827126 0.0 0.619601 0.194578 0.662751