Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00387 ATGATGAAGAAGCTAAGATGGGCAATGGACGGCCAAGGCTTCTGGGATCTCGATGTTTCAACGCCTAGAACACTCGATGGCTCTGCTTCCCCTGTTCCTTCTCATTTACACTTACTTCCTTTGGGATTATCCAGAGGCGTTCGTCTTTCCCGGGCCAAGCAGATCGATTTCATGCAGAGTTTCATGGCTGCTCCTTTTCTTCCTTCTTATTCCCCCTCCCATGGCTTCTCTCTCCAACGCGTCTTCTCCATCCCCTTTTCAGATTCTGGCTCTGCTACTCTCTTAGGCCAGTTCAATTTGCAGAAATTCATCTCGTCTCTTAAGAAATCTGGTGTTGGAGACATGGGTCAGTCGCTTTCTTCATTTCTGCAATGCATTGGAAGGCATCTTCGCCATCGGTCTTTGTATGCCCTTGGTATCTCTTCTGATATCTTGTTACCACCTGATGATTCCTTGATGATTAGCTTCGATGGATATGGCGACAGTGAAATAGTTCGAACAAAAGCAGTATTCCACCACAAGTTCCTACATCATGATCTAACTATGGAGGCACTTTCTCCAGGACTTTTCGTGGACAAATCTGGAAAATATTGGGATGTGCCTTCTTCAATAGTTGTTGATCTAGGTTCTGCTGCTTCTGAATCGGGTTTAAGCTATCATTTGTCTATGCACCAGAATGCTGGGTCTCCCTCGCAATCTGGAAGTGAACAGACTTGTTCGGCTCCTTTCTGTTTATTTCCTGGCCTTTCAGCCAAGGCTGCTTTTGCCTTTAAGAAGAACTTGGAAATCTGGAGAAGCAACGCCAAGAAGTTAAAGAGGGTGCAACCGTATGACATTTTCCTGTCAACTCCCCATGTTTCATTGTCAGCAATCATTGGTGCTGTGGTTACTACCTACTTTGGAGACAATTCGGTTATATCAGCAGCACAAGACAGTCTTCAGGAATTTAAAGGACTTTACATGCAGACTTCTGGAACAAGATCTACTATTTTCGCAGATTTATTTGCCTCCATTTCTTTTTCAGCTCAGTATGGGATGTTTCAAAGGAAATATTTGGATCTTACCCGTTTTTCTGCATGTATGGATTTCCATTCTGGCTCAAAGTTTATTTCAGGAGCCATGCTTTTGATAGATGATCTTTCCAACTCCCGGCACCCAAGAACTGAATCTGTGAAAGCGACCTTGCCTAACGCTAGATTTTCCCTTCAGCAGCAGATCGCTGGACCTGTCAGCTTTAGAGCAGATTCAGGAGTTACAATAGATTTGAATAAAGCAGGATGGGGTTTATTAGGAGTGGATGAGCCTACATTTGCCTTGGAATATGCGTTACAGGTCCTTGGTTCAGCTAAAGCCATTGCTTGGTATTCACCAAAGCACAGAGAATTTATGGTAGAGCTTCGTTTCTATGAGACCTGA 1416 44.0 MMKKLRWAMDGQGFWDLDVSTPRTLDGSASPVPSHLHLLPLGLSRGVRLSRAKQIDFMQSFMAAPFLPSYSPSHGFSLQRVFSIPFSDSGSATLLGQFNLQKFISSLKKSGVGDMGQSLSSFLQCIGRHLRHRSLYALGISSDILLPPDDSLMISFDGYGDSEIVRTKAVFHHKFLHHDLTMEALSPGLFVDKSGKYWDVPSSIVVDLGSAASESGLSYHLSMHQNAGSPSQSGSEQTCSAPFCLFPGLSAKAAFAFKKNLEIWRSNAKKLKRVQPYDIFLSTPHVSLSAIIGAVVTTYFGDNSVISAAQDSLQEFKGLYMQTSGTRSTIFADLFASISFSAQYGMFQRKYLDLTRFSACMDFHSGSKFISGAMLLIDDLSNSRHPRTESVKATLPNARFSLQQQIAGPVSFRADSGVTIDLNKAGWGLLGVDEPTFALEYALQVLGSAKAIAWYSPKHREFMVELRFYET 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4759389 4763004 + ClCG06G004160.2 Cla06g00387 274579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00387 471 PANTHER EXPRESSED PROTEIN 2 471 IPR044160 GO:0034196|GO:0070300|GO:1990052
Cla06g00387 471 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 4, CHLOROPLASTIC 2 471 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00387 - - - bhj:120068228 867.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00302 Cla-Chr5:2773082 Cla06g00387 Cla-Chr6:4759389 1.14E-86 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g265 . . . . . . Bma04g01150 . . . . . . . . . . . . . . . . . Cla06g00387 Cam06g0409 . Cco06g0417 Clacu06g0397 Cmu06g0396 Cre06g1173 . . . . . . . . . . . . . . . . Sed09g0582 . . . . . . Cpe12g00352 . Bhi12g02004 Tan06g2821 Cmetu11g1819 Lac11g1073 Hepe03g0004 . Lcy12g0920 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013512 2 2 1 1 1 0 1 0 0 1 1 0 0 1 1 1 0 1 1 0 1 1 1 1 1 0 1 2 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00387 Cla_Chr06 FPKM 101.964859 113.352043 62.7896 61.309536 65.109528 66.717293 62.51939 46.874638 45.012264 45.002739