Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00388 ATGAGGTGCTGGGCGGTGGGTTCGCCTGTTCTTCCTCCCATTTCCCTTCCCCTTTCACCAAGCATTCCATTTCCCAATGGCGCTTCATCTTCCTCCAGTCGTGGATTCCCGAATGTGGAGGATTCCTCTTATATCACAGAGTCCCCTTTCCCCAGCTTCAAATGGCGATTGCTCATCGCTTATGACGGTACCCGATACGCAGGCTGGCAATATCAGCGGTCACCACCCACTATCCAGTGCCTCATTGAAGAAGCCTTGATTGGAGCAACAAAGCTTGAAAGGAAGGATCTCCATTTAGTTGGTGCAAGCAGAACAGATAAAGGAGTTCATGCCTGGGGTCAGGTGGCTCACTTTATTACGCCATTTAACTACGATAGCTTGGAAAGCGTTCATGCTGCACTGAATGGTCTTCTTCCTGTGGATATAAGAGTTCGAGAGATCAGTCCCGCTGTGCCTGACTTTCATGCTCGGTTTTCTACATTAAGCAAGGTTTATCACTACAAGATATATAATAGCGCCATCTTGGATCCATTTCAGCGTTGCTACACTTACCATTGTGTTTATAAACTCAACTATGCAGCCATGAGAGAAGCTGCAAATTATTTCGTTGGGAAGCATGATTTTTCTGCTTTTACGAATGCAGCACATAATGATCGAGTGGTAAATCCAGTGAAGGACATTTTTCGTTTTGATGTCATAGAAATGGGACCTCTTGTGCAGATAGAAGTTGAGGGTTCTGGGTTCTTATATAGACAAGTTCGGAATATGGTTGGCTTGTTGGTTCAAATTGGAAAAGAAGCAATTCCTCCTGATGTTGTTCCTACGATTTTGGCTTCTCGAGATCGCAGAGAGCTTGCGAAGTATGCTTCGGGAGTTCCTCCACAGGGGCTCTGTCTTGTGAGTGTTAATTATAAAGAGGACCATTTAAAGCTTCCATCTGATTGCCCTGGGACTAGTTGTGGTAGGAGTCGTAGTGTGAGCAAATGTAAACTCCCTTTTTATTGA 1005 45.07 MRCWAVGSPVLPPISLPLSPSIPFPNGASSSSSRGFPNVEDSSYITESPFPSFKWRLLIAYDGTRYAGWQYQRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDIFRFDVIEMGPLVQIEVEGSGFLYRQVRNMVGLLVQIGKEAIPPDVVPTILASRDRRELAKYASGVPPQGLCLVSVNYKEDHLKLPSDCPGTSCGRSRSVSKCKLPFY 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4764253 4766821 - ClCG06G004170.2 Cla06g00388 274580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00388 334 SUPERFAMILY Pseudouridine synthase 53 310 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cla06g00388 334 Pfam tRNA pseudouridine synthase 60 158 IPR020097 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cla06g00388 334 Pfam tRNA pseudouridine synthase 198 304 IPR020097 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cla06g00388 334 PANTHER TRNA PSEUDOURIDINE SYNTHASE-LIKE 1 52 314 - -
Cla06g00388 334 CDD PseudoU_synth_EcTruA 57 304 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cla06g00388 334 PANTHER PSEUDOURIDYLATE SYNTHASE 52 314 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cla06g00388 334 Gene3D - 52 160 IPR020094 GO:0003723|GO:0009982
Cla06g00388 334 TIGRFAM hisT_truA: tRNA pseudouridine(38-40) synthase 57 289 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cla06g00388 334 Hamap tRNA pseudouridine synthase A [truA]. 53 304 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cla06g00388 334 Gene3D - 161 303 IPR020095 GO:0003723|GO:0009982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00388 K06173 truA, PUS1; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] - csv:101205797 622.468
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00388 Cla-Chr6:4764253 Cla11g01301 Cla-Chr11:26539218 5.75E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g264 Blo01g00018 . . Bda08g00342 . . . Bma05g00982 . . . . . . . . . . . . . . . . Cla06g00388 Cam06g0410 Cec06g0419 Cco06g0418 Clacu06g0398 Cmu06g0397 Cre06g1174 Cone14ag0674 Cone15ag0685 . . . . . . . . . . Bpe05g00791 . . . Sed06g1479 . . . . . . Cpe12g00351 . Bhi12g02002 Tan06g2820 Cmetu10g0038 . Hepe03g0005 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005575 1 3 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 5 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00388 Cla_Chr06 FPKM 7.524341 7.918064 9.208924 8.058443 6.265369 6.384142 6.299734 7.532322 7.228539 7.148408