Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla06g00391 | ATGCGACTGGGAAAGTACGAGCTTGGAAAGACTCTGGGGCATGGCAATTTTGGGAAGGTCAAATTTGCTATTAATTTCGAAACTCATCAACCCTTTGCTGTCAAAGAAGTTGATAAGACCAAGGTTATCCATCTTAATATCACCCATCAGTTTAAAAGGGAAATACAAACTCTCAAACTTCTCAAGCATCCAAATATAGTGAGGCTACATGAGGTTTTGGCTAGTAAAAGCAAAATTTACATGGTTCTCGAGTACGTTAACGGCGAAGAACTATTTGATACAATCGCATCAAAGGGGAAGCTATCAGAAGCTCAAGGCAGAAAAATCTTCCAACAATTACTTGACGGTGTGAGTTACTGCCATAGGAAAGGCGTTTACCATAGAGATCTCAAGTTGGAGAACATACTTGTTGATACCATGGGAAATGTTAAGATAACTGACTTTGGCTTGAGTGCTTTACCTGAGCATTTTAGGGACGATGGTTTGCTTCACACTACCTGTGGAAGCCCAAATTACGTAGCACCAGAAATTCTTGCTAACAGAGGGTATGATGGTGCTGCCTCAGATATTTGGTCTTGTGGTGTTATCCTGTTTGTAATTCTTACAGGATCTCTTCCTTTCGATGACAGAAATCTGTCTGTTCTTTATCATAAGATTTTGAAAGGAGAAATTCAGCTACCAAAGTGGTTGTCACAAGGAGCCCAAAATTTGATAAGAAGGATTCTTGATCCCAACCCTATTTCTAGAATAACTATGGCATCCATCAAAATGGATGATTGGTTTAGAACAGACTATCATCCAGCCTACCTTCATGACGAAGATGAAGATATATACACTAGTGAAGCTATGGCCTTCCCAATGCATCAAGTGAGTTCAGAGTCTTCCAATACTATAAATGCTTTTCAACTGATTGGAATGTCCTCATGCTTGGACCTTTCAGGTTTCTTTGAGAAAGAGGACATTTCTGAGAGGAAGATTAGATTTGCAACCAATCACTCTACAAAAGAAGATATACTCAACCGGATGGATGATCTTGTAACCAATATGGGGTTTCTTGTCCAGAAGAAACAAGGAAGGTTGAAAGTAATGAGAGAGGAAAAGGGTGAGAATGGTGTGTCCACCATACTTTCGGTATCGGCAGAGGTTTTTGAGATAAGTCCATCACTATACGTTGTAGAATTAAGAAAGTTGCATGGAGATTCATCTTCATATAGACAGTTGTGTAATATATTATCTAGTGATTTGGGTGTCCCCTCCAACCAAGACTCGGTGATGGCATAG | 1281 | 39.73 | MRLGKYELGKTLGHGNFGKVKFAINFETHQPFAVKEVDKTKVIHLNITHQFKREIQTLKLLKHPNIVRLHEVLASKSKIYMVLEYVNGEELFDTIASKGKLSEAQGRKIFQQLLDGVSYCHRKGVYHRDLKLENILVDTMGNVKITDFGLSALPEHFRDDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILFVILTGSLPFDDRNLSVLYHKILKGEIQLPKWLSQGAQNLIRRILDPNPISRITMASIKMDDWFRTDYHPAYLHDEDEDIYTSEAMAFPMHQVSSESSNTINAFQLIGMSSCLDLSGFFEKEDISERKIRFATNHSTKEDILNRMDDLVTNMGFLVQKKQGRLKVMREEKGENGVSTILSVSAEVFEISPSLYVVELRKLHGDSSSYRQLCNILSSDLGVPSNQDSVMA | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4802415 | 4812126 | + | ClCG06G004200.2 | Cla06g00391 | 274583 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla06g00391 | 426 | Pfam | NAF domain | 296 | 355 | IPR004041 | GO:0007165 | |
Cla06g00391 | 426 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 85 | - | - | |
Cla06g00391 | 426 | SMART | serkin_6 | 6 | 261 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla06g00391 | 426 | Gene3D | Kinase associated domain 1, KA1 | 292 | 417 | - | - | |
Cla06g00391 | 426 | Pfam | Protein kinase domain | 6 | 261 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla06g00391 | 426 | Gene3D | Transferase(Phosphotransferase) domain 1 | 86 | 284 | - | - | |
Cla06g00391 | 426 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 3 | 424 | - | - | |
Cla06g00391 | 426 | ProSiteProfiles | NAF domain profile. | 293 | 317 | IPR018451 | GO:0007165 | |
Cla06g00391 | 426 | CDD | CIPK_C | 299 | 415 | - | - | |
Cla06g00391 | 426 | ProSitePatterns | Protein kinases ATP-binding region signature. | 12 | 35 | IPR017441 | GO:0005524 | |
Cla06g00391 | 426 | ProSiteProfiles | Protein kinase domain profile. | 6 | 261 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla06g00391 | 426 | PANTHER | SERINE/THREONINE KINASE | 3 | 424 | - | - | |
Cla06g00391 | 426 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 294 | IPR011009 | - | |
Cla06g00391 | 426 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 125 | 137 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla06g00391 | Cla-Chr6:4802415 | Cla03g00613 | Cla-Chr3:7315854 | 2.29E-147 | dispersed | |
Cla06g00391 | Cla-Chr6:4802415 | Cla06g00393 | Cla-Chr6:4822889 | 5.40E-60 | proximal | |
Cla06g00391 | Cla-Chr6:4802415 | Cla06g00392 | Cla-Chr6:4820053 | 5.54E-39 | tandem | |
Cla05g00742 | Cla-Chr5:7021191 | Cla06g00391 | Cla-Chr6:4802415 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80617 | PF00069 | Pkinase | 6.50E-72 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla06g00391 | K07198 | - | csv:101206030 | 716.072 |