Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00391 ATGCGACTGGGAAAGTACGAGCTTGGAAAGACTCTGGGGCATGGCAATTTTGGGAAGGTCAAATTTGCTATTAATTTCGAAACTCATCAACCCTTTGCTGTCAAAGAAGTTGATAAGACCAAGGTTATCCATCTTAATATCACCCATCAGTTTAAAAGGGAAATACAAACTCTCAAACTTCTCAAGCATCCAAATATAGTGAGGCTACATGAGGTTTTGGCTAGTAAAAGCAAAATTTACATGGTTCTCGAGTACGTTAACGGCGAAGAACTATTTGATACAATCGCATCAAAGGGGAAGCTATCAGAAGCTCAAGGCAGAAAAATCTTCCAACAATTACTTGACGGTGTGAGTTACTGCCATAGGAAAGGCGTTTACCATAGAGATCTCAAGTTGGAGAACATACTTGTTGATACCATGGGAAATGTTAAGATAACTGACTTTGGCTTGAGTGCTTTACCTGAGCATTTTAGGGACGATGGTTTGCTTCACACTACCTGTGGAAGCCCAAATTACGTAGCACCAGAAATTCTTGCTAACAGAGGGTATGATGGTGCTGCCTCAGATATTTGGTCTTGTGGTGTTATCCTGTTTGTAATTCTTACAGGATCTCTTCCTTTCGATGACAGAAATCTGTCTGTTCTTTATCATAAGATTTTGAAAGGAGAAATTCAGCTACCAAAGTGGTTGTCACAAGGAGCCCAAAATTTGATAAGAAGGATTCTTGATCCCAACCCTATTTCTAGAATAACTATGGCATCCATCAAAATGGATGATTGGTTTAGAACAGACTATCATCCAGCCTACCTTCATGACGAAGATGAAGATATATACACTAGTGAAGCTATGGCCTTCCCAATGCATCAAGTGAGTTCAGAGTCTTCCAATACTATAAATGCTTTTCAACTGATTGGAATGTCCTCATGCTTGGACCTTTCAGGTTTCTTTGAGAAAGAGGACATTTCTGAGAGGAAGATTAGATTTGCAACCAATCACTCTACAAAAGAAGATATACTCAACCGGATGGATGATCTTGTAACCAATATGGGGTTTCTTGTCCAGAAGAAACAAGGAAGGTTGAAAGTAATGAGAGAGGAAAAGGGTGAGAATGGTGTGTCCACCATACTTTCGGTATCGGCAGAGGTTTTTGAGATAAGTCCATCACTATACGTTGTAGAATTAAGAAAGTTGCATGGAGATTCATCTTCATATAGACAGTTGTGTAATATATTATCTAGTGATTTGGGTGTCCCCTCCAACCAAGACTCGGTGATGGCATAG 1281 39.73 MRLGKYELGKTLGHGNFGKVKFAINFETHQPFAVKEVDKTKVIHLNITHQFKREIQTLKLLKHPNIVRLHEVLASKSKIYMVLEYVNGEELFDTIASKGKLSEAQGRKIFQQLLDGVSYCHRKGVYHRDLKLENILVDTMGNVKITDFGLSALPEHFRDDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILFVILTGSLPFDDRNLSVLYHKILKGEIQLPKWLSQGAQNLIRRILDPNPISRITMASIKMDDWFRTDYHPAYLHDEDEDIYTSEAMAFPMHQVSSESSNTINAFQLIGMSSCLDLSGFFEKEDISERKIRFATNHSTKEDILNRMDDLVTNMGFLVQKKQGRLKVMREEKGENGVSTILSVSAEVFEISPSLYVVELRKLHGDSSSYRQLCNILSSDLGVPSNQDSVMA 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4802415 4812126 + ClCG06G004200.2 Cla06g00391 274583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00391 426 Pfam NAF domain 296 355 IPR004041 GO:0007165
Cla06g00391 426 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Cla06g00391 426 SMART serkin_6 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00391 426 Gene3D Kinase associated domain 1, KA1 292 417 - -
Cla06g00391 426 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00391 426 Gene3D Transferase(Phosphotransferase) domain 1 86 284 - -
Cla06g00391 426 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 3 424 - -
Cla06g00391 426 ProSiteProfiles NAF domain profile. 293 317 IPR018451 GO:0007165
Cla06g00391 426 CDD CIPK_C 299 415 - -
Cla06g00391 426 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Cla06g00391 426 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00391 426 PANTHER SERINE/THREONINE KINASE 3 424 - -
Cla06g00391 426 SUPERFAMILY Protein kinase-like (PK-like) 3 294 IPR011009 -
Cla06g00391 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00391 Cla-Chr6:4802415 Cla03g00613 Cla-Chr3:7315854 2.29E-147 dispersed
Cla06g00391 Cla-Chr6:4802415 Cla06g00393 Cla-Chr6:4822889 5.40E-60 proximal
Cla06g00391 Cla-Chr6:4802415 Cla06g00392 Cla-Chr6:4820053 5.54E-39 tandem
Cla05g00742 Cla-Chr5:7021191 Cla06g00391 Cla-Chr6:4802415 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80617 PF00069 Pkinase 6.50E-72 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00391 K07198 - csv:101206030 716.072