Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00393 ATGTGGCTGTCACAAGGGGCCCAAAAGTTAATTAGACGGATTCTTGATCCTAACCCTATTTTTAGGGCAACTATGGAATCCATCAAAATAGACCATTGGTTTAGTAAGGACTATCATCCACCCAACTTTTACGATGAAGATCAAGAGGATATATACGTGGCCATCTCAACGAATCAAGAGAGTTCAGAGTCTCCCACTACTATAAATGCTTTTCAACTAATTGGAATGTCCTTATGCTTGGACCTTTCAGGTTTCTTTGAGGAAGAGGACATTTCGGAAAGGAAGATAAGATTTACAATCAATCACTCTACAAAAGAAGATACCATTAAGCGAATGGAGGATCTTGTAACAGATATGGGGTTTCTTGTCCAAAAGAAGGAAGGAAGGATCGTCGCAACTTACGCTTCCGGCGAAATGGCCAGCGGCTTGCAGATGAGTCCTCAGTTAGAGCAGATCCATGGGGAAATTCGTGACAATTTTCGGGCTCTTTCAAATGGGTTCCAAAGACTGGATAAGATCAAAGATTCCAGTAGACAAAGTAAGCAGTTGGAGGAGCTCACAGGAAAGATGAGGGAATGTAAAAGGTATGGAAAAACTAGCGCAAGATTCTTCGCACATGTGGGAGCATTAATAAAAGATTTTGACCGTGAAATCAAGGAGGAAGAGAGTAAAAATCCACCGGAAGTGAATAAGCAGCTCAATGATGAGAAGCAATCAATGATCAAGGAGCTGAATTCATTTGTTGCATTGAGGAAAACGTATATGAATAGTCTTGGTAATAAAAGGGTTGAGCTATTTGATGAGGGAGGTGTAAGTGAACCTACAGCTGATGATAATGTTCGGATGGCCTCATCAATGACAAATCAAGAACTTATAGATGCTGGGAAGAAGACAATGGATGAAACCGATCAGGCTATTGAACGCACGCAAAAGGTGGTTGAACAAACTATTGAAGTGGGAACTCAAACTGCTGTTACATTAAAAGGCCAAACTGAGCAAATGGGCCGTATAGTAAATGAGCTTGACACAATTAATTTTTCAATTAAGAAGGCTTCCCAGCTTGTGAAAGAAATTGGCAGACAGGTTGCTACAGATAAATGCATCATGCTGTTTCTGTTCCTAATTGTCTGTGGAGTAATAGCCATTATTGTAGTTAAGATTGTGAACCCCAACAACAAAAACATCAGGGATATTCCTGGATTGGCACCTCCAGCTCCTGCAAGGAGGCTTTTGTATCTGAGGACACCTGAACATTTCAAGTAA 1263 40.78 MWLSQGAQKLIRRILDPNPIFRATMESIKIDHWFSKDYHPPNFYDEDQEDIYVAISTNQESSESPTTINAFQLIGMSLCLDLSGFFEEEDISERKIRFTINHSTKEDTIKRMEDLVTDMGFLVQKKEGRIVATYASGEMASGLQMSPQLEQIHGEIRDNFRALSNGFQRLDKIKDSSRQSKQLEELTGKMRECKRYGKTSARFFAHVGALIKDFDREIKEEESKNPPEVNKQLNDEKQSMIKELNSFVALRKTYMNSLGNKRVELFDEGGVSEPTADDNVRMASSMTNQELIDAGKKTMDETDQAIERTQKVVEQTIEVGTQTAVTLKGQTEQMGRIVNELDTINFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKNIRDIPGLAPPAPARRLLYLRTPEHFK 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4822889 4836671 + ClCG06G004215.1 Cla06g00393 274585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00393 420 CDD SNARE_SNAP25N_23N_29N_SEC9N 295 357 IPR044766 GO:0005484|GO:0031201
Cla06g00393 420 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 139 406 - -
Cla06g00393 420 Pfam NAF domain 65 125 IPR004041 GO:0007165
Cla06g00393 420 SMART tSNARE_6 291 358 IPR000727 -
Cla06g00393 420 PANTHER BNACNNG50640D PROTEIN 139 406 - -
Cla06g00393 420 SUPERFAMILY SNARE fusion complex 286 359 - -
Cla06g00393 420 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 296 358 IPR000727 -
Cla06g00393 420 Gene3D - 287 366 - -
Cla06g00393 420 Gene3D Kinase associated domain 1, KA1 62 158 - -
Cla06g00393 420 ProSiteProfiles NAF domain profile. 63 87 IPR018451 GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00393 K08494 NSPN; novel plant SNARE - csv:101206271 459.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00393 Cla-Chr6:4822889 Cla10g00202 Cla-Chr10:2344226 1.45E-117 dispersed
Cla06g00389 Cla-Chr6:4772739 Cla06g00393 Cla-Chr6:4822889 1.61E-22 proximal
Cla06g00391 Cla-Chr6:4802415 Cla06g00393 Cla-Chr6:4822889 5.40E-60 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g255 Blo01g00024 Blo12g00374 Bda03g00835 . Bpe04g00791 . Bma04g00734 Bma05g00986 . . . . . . . . . . . . . . . . Cla06g00393 Cam06g0415 Cec06g0423 Cco06g0423 Clacu06g0402 Cmu06g0402 Cre06g1181 Cone14ag0681 Cone15ag0693 . . . . . . . . . . . . . . . . . . . . . Cpe12g00349 . Bhi12g01996 . . . Hepe03g0009 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001212 4 4 3 3 2 2 6 2 2 2 2 2 3 3 2 3 2 4 3 2 2 2 2 2 2 2 2 2 2 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00393 Cla_Chr06 FPKM 21.673847 26.138823 29.890814 31.556721 27.604809 28.837238 26.286518 11.215392 10.480789 10.012221