Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00395 ATGTTAGAGGAAAAAGAAATGGCTCCTGATCTAAACACGACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTATGGGTGTTTACTGGGATCCTGGTTGGGGTGTTTATTGTAATAGTCCTTGTAGTGTTATCAATATGTGTTACTTCACGAAGAAAATCTAGAAGGGTAAGTGGCATGCTTCCTCTCAACCGTATTTCCATTGCATCAAAGGAAATCAAGGAGATTGGAGTGGATCATGTTACACCAATCCAACAGGGTTCCCTCCCCCATGATGGATTCGACACAGAATCAGAAAAAGTTCTTCTATATTCAAACAAGGCATACAATTACAGCATATCAGGCTCAGTTGATCACACAGAGATATATGCTATTGGCTCTGGAGAAGGGAGCAAGGAAGCAAGTGTTTTGCAAAGACCCTCAGATTCAATACCATCGAATCCTTCGCCACTGGCTGGTCTGCCAGAGTTCTCACAACTGGGATGGGGTCACTGGTTCACCTTAAGAGACCTGGAACTTGCAACAATGCATTTTTCAAACGATAATATAATTGGGGAGGGAGGATATGGAGTTGTTTATCGAGGTCATCTTATCAATGGGACACCTGTAGCTGTCAAAAAGCTTTTAAGTTTAGGACAAGCGGAAAGGGAATTCAGAGTGGAAGTAGAAGCATTTGGGCATGTGCGGCATAAGAACTTAGTACGGCTCCTGGGATACTGCATTGAAGGAACGCACAGGATACTAGTATATGAGTACGTGGATAATGGAAATCTAGAGCAGTGGCTTCACGGAGCTCTATGTCAGCATGGATATCTCACTTGGGAAGCAAGAATCAAAATTCTCCTTGGTACTGCTAAGGCACTGGCATATTTGCATGAGGCAATCGAGCCAAAAATCGTCCATCGAGATATCAAGGCAAGCAACATATTGATTGATGATGAGTTTAATGCAAAACTATCAGACTTTGGGCTGGCCAAATTACTCGGTGCTGGGAAGAGCCACATTACCACCAGAGTTATGGGTACGTTTGGATATGTGGCACCAGAATATGCCAAATCTGGGCTTCTAAATGAGAAGAGCGATGTTTATAGTTTTGGAGTGGTACTTTTGGAAGCAATTACTGGAAGAGACCCTGTTGATTATGGTCGCCCAACACATGAGGTAAATTTGGTGGATTGGCTAAAGATGATGGTAGGGAGCAAACGGTCAGAAGAGGTGGTAGATCCAAATATAGAGAGAAAGCCATCAATTAGTGAACTGAAGCGAGTTCTTTTGACTGCTTTGAGGTGTGTGGATCCAGATGCTGATAAGAGGCCTAAGATGAGCCAAGTTTCCCGCATGCTCGAGTCTGAAGAATATCCAATTCCTCGACAGGACCGGAGACCCAGAAAAAGCAATGCCATTGCGACCAAAATGGAAACTGAGAAACAGGAAAGAGGACCCAGACGACACAGATAA 1461 43.53 MLEEKEMAPDLNTTLSKKTFVFGMKVWVFTGILVGVFIVIVLVVLSICVTSRRKSRRVSGMLPLNRISIASKEIKEIGVDHVTPIQQGSLPHDGFDTESEKVLLYSNKAYNYSISGSVDHTEIYAIGSGEGSKEASVLQRPSDSIPSNPSPLAGLPEFSQLGWGHWFTLRDLELATMHFSNDNIIGEGGYGVVYRGHLINGTPVAVKKLLSLGQAEREFRVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGALCQHGYLTWEARIKILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPNIERKPSISELKRVLLTALRCVDPDADKRPKMSQVSRMLESEEYPIPRQDRRPRKSNAIATKMETEKQERGPRRHR 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4846508 4849272 + ClCG06G004240.2 Cla06g00395 274587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00395 486 MobiDBLite consensus disorder prediction 453 486 - -
Cla06g00395 486 Gene3D Transferase(Phosphotransferase) domain 1 254 463 - -
Cla06g00395 486 ProSiteProfiles Protein kinase domain profile. 179 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00395 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Cla06g00395 486 SUPERFAMILY Protein kinase-like (PK-like) 163 460 IPR011009 -
Cla06g00395 486 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 8 479 - -
Cla06g00395 486 SMART serkin_6 179 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00395 486 Pfam Protein kinase domain 180 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00395 486 MobiDBLite consensus disorder prediction 436 486 - -
Cla06g00395 486 CDD STKc_IRAK 185 450 - -
Cla06g00395 486 ProSitePatterns Protein kinases ATP-binding region signature. 185 208 IPR017441 GO:0005524
Cla06g00395 486 PANTHER OS01G0323000 PROTEIN 8 479 - -
Cla06g00395 486 Gene3D Phosphorylase Kinase; domain 1 159 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01803 Cla-Chr2:33065120 Cla06g00395 Cla-Chr6:4846508 0 dispersed
Cla06g00395 Cla-Chr6:4846508 Cla09g02192 Cla-Chr9:39516751 0 dispersed
Cla02g01451 Cla-Chr2:29062092 Cla06g00395 Cla-Chr6:4846508 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80619 PF00069 Pkinase 4.40E-48 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00395 - - csv:101204202 876.315