Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00396 ATGTTGAAGAACATTCAACATCAGGAATGGCGAGATCTAAAAGAGAGCTTGGATCGCCATTGTTGTTGTTCGGAAGGAACGAATTTTGTGAGTAAAGAACAGAAAAATCCCACTCACTCATCCACTTCATTTCTCGAAGCTCTTGGGAGGGAACTCCATCTTGTTCCTTGCAGCCAAGCTATGGCTTCCTTCTCCTTCTCCTCGCTCCTTCCTTCTTCAGTTTCTTTCGATCATGGCTCCCCTTCCTTTTTTCCCATCTTTGTTTCATCTTCTTCACACTCCAATTCTCGCATTGTTCGCTGTGCATTTGCAGCCCCCACTAGAAAATTCCCTCCTCCTCCTCCTTTTACTTCTTCTTCATTACCTGCTAAGAAGAAGCACTGGAAGCAAGGGGAATTTCCAGGAATTACAGAGACATCCGCCCCCAGGAAGACCCCTCTCAAGAATGTCAAAAAGAAATTAGACCGCAAGAACAATGCCAAGGCTTGGGCCAACACCGTCACTGAAGCCTTGTCCGACCATATCACGAATAAACGGTGGCTTCAAGCTCTTGAGGTGTTTGAAATGCTCCGCGAACAGCCGTTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTACTTGGGAGATCTGGCCAACCACATCGTGCCCGTCTGCTTTTCGACACAATGGTTGAAGAAAGATGTGAACCTACCTCTGAACTTTACACTGCTTTGCTTGCTGCGTATTGTCGGAACAATCTCATTGATGATGCATTCTCCACTCTTAATCTCATGAAGACCCTCCCTGGCTGCCAACCTGATGTGTACACTTATAGTACCTTAATCAAGGCTTGTGTCGATGCTTCTCGCTTTGATATGGTCGAATCATTGTATGAGGAAATGGCCGAACGACTGATAACTCCAAATACAGTGACTCAGAACATAGTCTTAAGTGGATACGGCAAGATAGGGAAGTATGACCAAATGGAGAAAGTTCTTTTAGGAATGCTTGAGAGCACAACTTGTAGACCGGATGTGTGGACAATGAATATAATTCTTAGCGTGTTTGGTAATAAGGGACAGATTGAAATGATGGAAAAATGGTATGAGAAGTTTCGTAACTTTGGTATCGAGCCAGAAACACGTACATTTAATATTTTGATTGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACATCAACATACAACAATGTGATTGAAGCTTTCGCTGATGTGGGAGATGCAAAGAACATGGAGTACACGTTTGAGCAGATGCGTGCTGAGGGCATGAGAGCAGATACCAAGACGTTCTGTTGCCTTATAAACGGATATGCAAATGCAGGTCTCTTCCATAAGGTAATTAGCTCAGTTAAGTTGGCAGGAAAATTCGAGATTCCAGAAAATACCTCATTTTATAATGCAGTTATATCTGCATGTGCTAAGGCTGAGGATCTGATGGAAATGGATAGAGTATTTAAGCGAATGAAAGATAAACATTGTCGGCCAGATAGCAAAACGTATTCTATTATGATGGAAGCATATGGAAAGGAAGGCATGAATGATAGAGTTCATTACTTGGAGCTGGAAAAGAAACAGGTGATTGATTATGCTTCTAATACCGAGTGA 1665 42.58 MLKNIQHQEWRDLKESLDRHCCCSEGTNFVSKEQKNPTHSSTSFLEALGRELHLVPCSQAMASFSFSSLLPSSVSFDHGSPSFFPIFVSSSSHSNSRIVRCAFAAPTRKFPPPPPFTSSSLPAKKKHWKQGEFPGITETSAPRKTPLKNVKKKLDRKNNAKAWANTVTEALSDHITNKRWLQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMVEERCEPTSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDASRFDMVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKFEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCRPDSKTYSIMMEAYGKEGMNDRVHYLELEKKQVIDYASNTE 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4850255 4856295 + ClCG06G004250.2 Cla06g00396 274588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00396 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Cla06g00396 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 340 IPR002885 -
Cla06g00396 554 PANTHER OS03G0309800 PROTEIN 89 549 - -
Cla06g00396 554 Pfam Pentatricopeptide repeat domain 410 458 IPR002885 -
Cla06g00396 554 Gene3D Tetratricopeptide repeat domain 265 332 IPR011990 GO:0005515
Cla06g00396 554 Gene3D Tetratricopeptide repeat domain 406 470 IPR011990 GO:0005515
Cla06g00396 554 Gene3D Tetratricopeptide repeat domain 333 405 IPR011990 GO:0005515
Cla06g00396 554 Gene3D Tetratricopeptide repeat domain 140 264 IPR011990 GO:0005515
Cla06g00396 554 Gene3D Tetratricopeptide repeat domain 471 542 IPR011990 GO:0005515
Cla06g00396 554 Pfam PPR repeat 202 231 IPR002885 -
Cla06g00396 554 Pfam PPR repeat 310 334 IPR002885 -
Cla06g00396 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Cla06g00396 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Cla06g00396 554 PANTHER ATPASE EXPRESSION PROTEIN 3 89 549 - -
Cla06g00396 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Cla06g00396 554 TIGRFAM PPR: pentatricopeptide repeat domain 485 517 IPR002885 -
Cla06g00396 554 TIGRFAM PPR: pentatricopeptide repeat domain 344 375 IPR002885 -
Cla06g00396 554 TIGRFAM PPR: pentatricopeptide repeat domain 202 234 IPR002885 -
Cla06g00396 554 TIGRFAM PPR: pentatricopeptide repeat domain 307 341 IPR002885 -
Cla06g00396 554 TIGRFAM PPR: pentatricopeptide repeat domain 237 271 IPR002885 -
Cla06g00396 554 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Cla06g00396 554 TIGRFAM PPR: pentatricopeptide repeat domain 414 446 IPR002885 -
Cla06g00396 554 TIGRFAM PPR: pentatricopeptide repeat domain 379 407 IPR002885 -
Cla06g00396 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Cla06g00396 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Cla06g00396 554 Pfam PPR repeat family 481 527 IPR002885 -
Cla06g00396 554 Pfam PPR repeat family 235 282 IPR002885 -
Cla06g00396 554 Pfam PPR repeat family 340 387 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00396 - - - csv:101204445 878.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00396 Cla-Chr6:4850255 Cla09g00834 Cla-Chr9:8563163 2.87E-120 dispersed
Cla06g00396 Cla-Chr6:4850255 Cla02g00278 Cla-Chr2:2741039 2.14E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g249 . Blo12g00376 Bda03g00833 . Bpe04g00789 . Bma04g00732 . . . . . . . . . . . . . . . . . Cla06g00396 Cam06g0417 Cec06g0425 Cco06g0425 Clacu06g0404 Cmu06g0404 Cre06g1183 Cone14ag0683 Cone15ag0695 . . . . . . . . . . . . . . Sed09g0597 . . . . . . Cpe12g00347 . Bhi12g01993 Tan06g2812 Cmetu11g0485 Lac11g1038 Hepe03g0014 . Lcy12g0899 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008423 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00396 Cla_Chr06 FPKM 31.251644 34.0135 26.01952 22.599237 32.973839 41.414364 37.14064 31.743662 35.788723 38.793365