Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00399 ATGGATGTTGCTAAAATCGCTCAAATTCTATCTGAGACGCTTAGCAATGACGCGCAGGTCGTCCATGGAGCTACCGAGTCTCTTGATCGCCTCTCTTCTCATCCTGAGCTTCCGTTTGCTCTACTCTACATTGCTTCTGGAAATCATGATCAAGGTCTAAAGATAGCCGCTGCTGCTTACCTTAAAAATTTGAGTCGGAGAAATGTTGAGGGAGAATTTCCATGTTCAAAAGTTAGCAAGGGGTTCAAGGACGAACTGATGAGAGCCTTGTTCCAAGCGGAACCGAAGATTCTAAAAGTTTTGGTTGAAGTGTTTCATAGCATAGTGACCAATGAGTTTGTGAAGCATAACTCATGGCCTGAACTTGTGTCTGATCTTTGCTCTGCTATTCAAAACAGCAGTCTTTTCAACAATGGAGCTGAATGTCCCTGGAATGCCATCAACGCGCTGTCTGTTCTCTGTACAACTTGCAGACCTTTCCAATACTTTTTGAATCCCAAAGATCCTAAGGAGCCTGTACCACCACAGTTAGAGCAACTTGCAAACACAATTATTGTTCCCCTACTAGCTGTATTCCATCGTCTTGTTGAACAGGCTCTTTCTAACCATGATGGAAGGGAAGTTGAGAGAGATAAGATTCTTTCGATAGTATGCAAATGTGTCTACTTTTGTGTGAGATCGCATATGCCATCTTCTTTGGTGCCTTTACTTCCAACGTTCTGCCGTGATTTAATTGGCATTCTAGATTCCATAAAATTTGAGGCTGCAGTTTCCCCAGAGTATGGCAATGTGAGCAGGTTGAAAACCACAAAGAGAAGCTTGCTTATTTTCTGCGCCTTTGTTACCCGACACCGAAAGCATACTGACAAGTTGATGCCACACATCATAAAATGTGTCTTGAACATTGTGAATTATAGCAGAAATGCCCATAAGCTCGACTTTTTATCAGAGAGGATTATTTCGCTGGCCTTTGATGTAATTTCCCATGTTCTGGAGACGGGCCGAGGGTGGAGATTGGTTTCTCCGCACTTTTCAACATTGATACACTCTGGGATATTTCCATCACTTATAATGAATGAGAAGGACGTTGCTGAGTGGGAGGATGATCCAGAAGAGTACATAAGGAAGAATCTTCCATCTGACCTAGAAGAAGTTTCTGGTTGGAGGGAGGATTTATACACAGCCAGGAAAAGTGCAACAAACTTGCTTGGCGTTATTGCAATGTCAAAGGGGCCTCCCACAGTGACCCATACGAATGGTTCTTCAGCTTTATCAAAGCGTAAAAAAGGTAACAAGAGAACAAATAATCAATGCGCTACCATGGGGGAGTTGGTTGTACATCCATTTCTTTTGAAGAATCCTATTCCCTCTGATGCAAATGCTTCCCAAACGAGTATTGTAAATAGTTACTATGGTGTGCTAATTGCATATGGTGGCTTGCTTGATTTTCTAAGAGAGCAACAACCTGGATATGTGACGTTTCTAATCCGCACAAGAGTGTTGCCTCTATATGCTATGTCAACGTGCCTGCCATACTTGATTGCCTCTGCAAATTGGGTACTTGGGGAGCTTGCATCCTGTCTGCCTGAAGAGGTCTGTGCAGAAATATATTCTTCATTGGTTAAGGCATTATCCATGCCTGATAAAGAGGAAGTTTCATTTTACCCTGTGCGAGTTTCTGCTGCTGGAGCAATAGCCAAGCTTCTTGAAAATGACTACTTGCCACCTGAGTGGTTACCTCTTCTTCAAGTTGTAATAGGTGGGATTGGCCAAGATGATGAAGAGAACTCCATTTTGTTTCAGCTTCTCAGTTCCATGGTGGAAGCTGGAAATGAAAACGTTGCCATCCATATTCCTCACTCCGTTTTGTCTCTGGTTGGTGCAATCTCAAAAAGCATACCTCCTAATTTTGAGCCATGGCCTCAAGTTGTTGAACGTGCGTTTACAGCTTTATCAGTGATGGCTCAGTCTTGGGAAAACTTCATACTTGAGAAAACTGAGCTAGATGCATTGTGTGAACGGTCAACATCAGATCAAGCCACAATCAGTCGGTCATTCTCGTCTCTCTTGCAGCAGGCGTGGCTTGCACCGATGTACTCATTGATTTTCAAGGCGTCGTTGCTGGATTCCCAAACTCTTGCCTCCTTCCGTAGATTAAGGATTCTAAATGGCCTTCAGACAGAATGGGTCTTGGATTCAGCATGCCCAACGTCAGTTTTCAATGAGATGATGGAGTGTGCAAGCTCTGTTCTTGAAATAGCAACGTATGATTCATCCGCGCTTAAGTTGGCAACCTATTTCATTTCATGTGAAAAAAGAGGATTGCTTAAAAGACCCTGGAAAGAAAGTGAGACTGGGTTAGCCTTAAACTCTATGAGTGGTGCTAAGGCTCCTGGCCGGATGATGTCCCAGGAACTGGATGACGACCAAGAATTCTTGCCCCCTCCATCATGCATAGATCATTCATCAAGGTTGCTTCAGTTCATCATGTTGTCTGTTACAGGGAGCAATACTATTGTAGAGCTTAAAATATCTGAATTAGTATCAGTCTGGGCTGATCTTATTGCCGACTGGCATTCTTGGGAAGAGTCAGAGGATTTCTCAGTCTTTAACTGCATTATGGAAGTTGTTAGATTAAATAGCAAATATGCACTGAAGAACTTTTTTGTGAAGCCAGCACCATCTCCTCCAGCTCCACCAGTGCCTCGGCGGTCTATTGTAGAAAACATTGGAGCTTTCATTAGTCAGTCAATCTCACAATATCCATCTGCTACATGGAAGGCTTGTTCGTGTGTTCATATGTTATTGAATGTTCCTAGTTACTCATCTGAAGTGGAAGGTGTTAAGGAGTCGCTAGTAGTCACATTTAGTCAAACATCATTTTCCCGTTTTAGGGAAATCCAAAGCAAACCCAGTGCATTATGGAAGCCTTTATTGCTTTCCATATCAACATGCTATATCTGTTGTCCTGATACTGTTGAAAGACTTTTGGAGAAGTATGATGGAGGAGGCTTCACAGTCTGGGTCTCAGCCCTAGGTTATATCTGTAGCAGCTCTTATGCACCCGGTCTGTCTGCAGAATCAGAGATAAAGTTGATTGTGATGTCATTGGCCAAGGTGGTTGAACGAATAATGGAGTTTGGAAAACCAATAGATGATTTTCTGTGGAAGTGCTTTGGTTCATTGATGGAGGCATCTATACGACTGAAAGAAGTGCGAGAAGAAAATGAAGAACAGTCTGAAGAAGACGAAGAGGATGAGGACAACGACAGTGATGAAATAGAAGATGATGAGGATTCTGATGCTGATGAGCTTGAAGAAACTGAAGAAGAATTTCTGGATAGGTATGCTAAAGCTGCTATTGATTTGGAAAACTCTACATTTATTGAAGAGGGGGATGTGGAAGATCACGACCAGGATATTGAATTGGGTTGTTATGAAGAGGTTGATGAGGGAAGGATCATATACTTTTTATTGGAGAAATATCACCCCATCCTGAGTCAAGGACAGGGGTGGCCATCAGAGCTCCCAATGAAATTCTTGAATGCATATCCAGCTTATACTACGTTTCTCCGACTGTCTGGGTAG 3588 42.73 MDVAKIAQILSETLSNDAQVVHGATESLDRLSSHPELPFALLYIASGNHDQGLKIAAAAYLKNLSRRNVEGEFPCSKVSKGFKDELMRALFQAEPKILKVLVEVFHSIVTNEFVKHNSWPELVSDLCSAIQNSSLFNNGAECPWNAINALSVLCTTCRPFQYFLNPKDPKEPVPPQLEQLANTIIVPLLAVFHRLVEQALSNHDGREVERDKILSIVCKCVYFCVRSHMPSSLVPLLPTFCRDLIGILDSIKFEAAVSPEYGNVSRLKTTKRSLLIFCAFVTRHRKHTDKLMPHIIKCVLNIVNYSRNAHKLDFLSERIISLAFDVISHVLETGRGWRLVSPHFSTLIHSGIFPSLIMNEKDVAEWEDDPEEYIRKNLPSDLEEVSGWREDLYTARKSATNLLGVIAMSKGPPTVTHTNGSSALSKRKKGNKRTNNQCATMGELVVHPFLLKNPIPSDANASQTSIVNSYYGVLIAYGGLLDFLREQQPGYVTFLIRTRVLPLYAMSTCLPYLIASANWVLGELASCLPEEVCAEIYSSLVKALSMPDKEEVSFYPVRVSAAGAIAKLLENDYLPPEWLPLLQVVIGGIGQDDEENSILFQLLSSMVEAGNENVAIHIPHSVLSLVGAISKSIPPNFEPWPQVVERAFTALSVMAQSWENFILEKTELDALCERSTSDQATISRSFSSLLQQAWLAPMYSLIFKASLLDSQTLASFRRLRILNGLQTEWVLDSACPTSVFNEMMECASSVLEIATYDSSALKLATYFISCEKRGLLKRPWKESETGLALNSMSGAKAPGRMMSQELDDDQEFLPPPSCIDHSSRLLQFIMLSVTGSNTIVELKISELVSVWADLIADWHSWEESEDFSVFNCIMEVVRLNSKYALKNFFVKPAPSPPAPPVPRRSIVENIGAFISQSISQYPSATWKACSCVHMLLNVPSYSSEVEGVKESLVVTFSQTSFSRFREIQSKPSALWKPLLLSISTCYICCPDTVERLLEKYDGGGFTVWVSALGYICSSSYAPGLSAESEIKLIVMSLAKVVERIMEFGKPIDDFLWKCFGSLMEASIRLKEVREENEEQSEEDEEDEDNDSDEIEDDEDSDADELEETEEEFLDRYAKAAIDLENSTFIEEGDVEDHDQDIELGCYEEVDEGRIIYFLLEKYHPILSQGQGWPSELPMKFLNAYPAYTTFLRLSG 1195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4894948 4913414 + ClCG06G004280.1 Cla06g00399 274591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00399 1195 Gene3D - 1 778 IPR011989 -
Cla06g00399 1195 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 3 701 - -
Cla06g00399 1195 Coils Coil 1062 1089 - -
Cla06g00399 1195 PANTHER IMPORTIN-7, 8, 11 812 1192 - -
Cla06g00399 1195 Coils Coil 1091 1111 - -
Cla06g00399 1195 MobiDBLite consensus disorder prediction 1076 1109 - -
Cla06g00399 1195 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 812 1192 - -
Cla06g00399 1195 MobiDBLite consensus disorder prediction 1072 1109 - -
Cla06g00399 1195 MobiDBLite consensus disorder prediction 414 434 - -
Cla06g00399 1195 PANTHER IMPORTIN-7, 8, 11 3 701 - -
Cla06g00399 1195 SUPERFAMILY ARM repeat 3 1115 IPR016024 -
Cla06g00399 1195 Pfam Cse1 212 403 IPR013713 GO:0006886
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00399 - - - cpep:111807225 1281.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1 . . . . . . . . . Cmo17g00383 . . . . . . . . . . . . . . Cla06g00399 Cam06g0420 Cec06g0428 Cco06g0428 Clacu06g0407 Cmu06g0407 Cre06g1186 . . . . . . Chy11g01605 . . . . . . . . . Sed09g0632 . . . Cma17g00394 . Car17g00365 Cpe12g00345 . Bhi12g01983 Tan06g2808 Cmetu11g2556 . . . Lcy12g0895 . . . . . . . Lsi09g01519 . . Cme11g02111
Vvi5g189 . . . . . . . . . Cmo17g00383 . . . . . . . . . . . . . . Cla06g00399 Cam06g0420 Cec06g0428 Cco06g0428 Clacu06g0407 Cmu06g0407 Cre06g1186 . . . . . . Chy11g01605 . . . . . . . . . . . . . Cma17g00394 . Car17g00365 . . . . . . . . . . . . . . . . Lsi09g01519 . . Cme11g02111
Vvi5g240 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00399 Cam06g0420 Cec06g0428 Cco06g0428 Clacu06g0407 Cmu06g0407 Cre06g1186 . . . . . . . . . . . . . . . . . . . . . . . Cpe12g00345 . Bhi12g01987 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010694 0 5 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 5 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00399 Cla_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0