Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00400 ATGTACAATGAAGGAGCCACCCCTGAGTTTATTTTTGATCAGGGCGTTTATTATCCTACTGCTGCCAATTATGGTTATTACTGTACAGGATTTGAATCACCTGGCGAATGGGAGGACCATTCTCGGATTTTTGGTTTAGATGGTCCAGATATCCAATACGCAGGTGCTCAAAATGAGAATTCATCTTATGTATATTATACGCCAAGCTATGGATATGCACAGTCTCAATACAACCCGTATAATCCTTACATACATGGTGCTATGATAGGACCAGATGGTCCATATCTAGGGGCCCAACAGTTTTACACCATTCCTTCTTATGACAGCTCCGTTTCTTCTCCTGCTTATGTCCCCGTTATTGTTCAGCCAGATATTGTCCCCAATAGTTCCATTGATTTGATTGACCCTTCAATTAATAGATCTAATGGAAATGGAAGAATGCAAAAAAATGAGAGTTCTGGAAGCTTTTCTAGGAACCACTCCAAACCTGCTTTAGACCAGAGAAATTCTTTGGCAAGGTTATCAGAAGTGCCAAGAGCTAACGTTGGTCCAAGTAAGCAAAGTGGAACACTTGGTAGCATTTCTGCTGGTGGTCATGCTGGATCAGTTTCATCACGTGTTTTTCAGGGTAGGGGTGCTTATGGTTCAATTCAACCAGTAGATGACATATCTAATGGGAAGGTTGTTTCTCAACATAGTCAATTGAGGGCACCTCATCCTATTAATAATGCCTTTCCTGACTTTCGATCAAGTGCTCATGGACAGGCTGCGATTGCTAAACTTCAGCCTAAGGTTCAAGTTGGCAGAGTTCTGGATGGTGCAAATGCTAGTTCAGATGCATTAAGTGAGCAGAATCGAGGTCCTAGAATCAGCAGATCTAAAACCCAACTGGCTCTGAAAGCCTACACAACCAAGGCTGGAGATGGTAATGCAGATGGAAACATTATTATCTACACAGATCAGTATAATAAGGATGATTTTCCTATTGAATATGTGGATGCAAAATTTTTTGTAATAAAATCTTACAGTGAGGATGATGTTCACAAGAGCATTAAGTATAATGTTTGGTCGTCTACTCCAAATGGGAATAAGAAACTTAATATTGCATACGAAGATGCTCGGAGAATAGTTTCAGCAAAATCAAGAAGCTGTCCTGTATTCCTCTTTTTCTCTGTCAATGCAAGTGGTCAGTTCTGTGGTGTAGCAGAGATGGTTGGCCCTGTGGACTTCAACAGGGATATGGATTTTTGGCAGCAGGATAAATGGAATGGAAGTTTCCCTGTTAAGTGGCACATAATCAAAGACGTGCCGAACAACAACTTTAGGCATGTCATTTTGGAGAATAATGAAAATAAACCTGTTACTAATAGCAGAGATACCCAAGAGGTAAGAGTGATTTGGATATCTTGTCATCCTCTGATAGGTTGCATTTGCATTCATAATTCTTGTGGATGTTCAAACTTCTTGACTTGTGGATGTGATCCTATCAAATTGTGTATGGCATGCCTAGTCCGCTACTTGATACCATTCAAAAAAGGTCTGGAGATGCTTAAATTATTCAAGAGTCATACACTAAAGACCTCTTTACTCGACGATTTTATATATTATGAAAACCGTCAGAAGATCATGCAGGAAGAGAAAGCGAGGTTGGTTATTAGAAGGCTTGAGCGTCCATATTTTGTACCTGCATTAGATCATACTCGACAGCTAAATTGTGTTATTGAGCTGCCTTTGAGAGAGGATAAGAATCTTAACAAGCCCAATGATGGTCCGAGGGGGTTGGCAAGGAATGTAGCCTCAAGAGCCGAGCAGCAGGTCTACTCAAACCCTGGTAAGACTGGTGCTGTGGTAGTGAAGGAAAAGCCAAAGCACGATGCCGAAGAAAAAGTTGATGTTATGTCAACGTTGAAGATGGAATCACTTGAAATTGGCCCGAAAGCGGTTGAAAATCCTTTGGGGGGTGCTACACCTGCTGCTGCGAGTGATGCAAATACCAAACTTCATACTGAAGTTGTCACTGTCGGTTCAATGCCAATCAAAGTTAATGGATATAATACCACAACTTCTGGTGTTTTGACCGTGGGAACGATTCCGCTCGATCCTAAAGCCCTGCAGCTTGACAAAGATGATATATTCCTAAAAAATGGGTCTCAACACAAATGA 2163 41.1 MYNEGATPEFIFDQGVYYPTAANYGYYCTGFESPGEWEDHSRIFGLDGPDIQYAGAQNENSSYVYYTPSYGYAQSQYNPYNPYIHGAMIGPDGPYLGAQQFYTIPSYDSSVSSPAYVPVIVQPDIVPNSSIDLIDPSINRSNGNGRMQKNESSGSFSRNHSKPALDQRNSLARLSEVPRANVGPSKQSGTLGSISAGGHAGSVSSRVFQGRGAYGSIQPVDDISNGKVVSQHSQLRAPHPINNAFPDFRSSAHGQAAIAKLQPKVQVGRVLDGANASSDALSEQNRGPRISRSKTQLALKAYTTKAGDGNADGNIIIYTDQYNKDDFPIEYVDAKFFVIKSYSEDDVHKSIKYNVWSSTPNGNKKLNIAYEDARRIVSAKSRSCPVFLFFSVNASGQFCGVAEMVGPVDFNRDMDFWQQDKWNGSFPVKWHIIKDVPNNNFRHVILENNENKPVTNSRDTQEVRVIWISCHPLIGCICIHNSCGCSNFLTCGCDPIKLCMACLVRYLIPFKKGLEMLKLFKSHTLKTSLLDDFIYYENRQKIMQEEKARLVIRRLERPYFVPALDHTRQLNCVIELPLREDKNLNKPNDGPRGLARNVASRAEQQVYSNPGKTGAVVVKEKPKHDAEEKVDVMSTLKMESLEIGPKAVENPLGGATPAAASDANTKLHTEVVTVGSMPIKVNGYNTTTSGVLTVGTIPLDPKALQLDKDDIFLKNGSQHK 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4917266 4922059 + ClCG06G004290.2 Cla06g00400 274592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00400 720 Pfam YT521-B-like domain 334 464 IPR007275 GO:0003723
Cla06g00400 720 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 464 IPR045168 -
Cla06g00400 720 MobiDBLite consensus disorder prediction 181 202 - -
Cla06g00400 720 MobiDBLite consensus disorder prediction 131 202 - -
Cla06g00400 720 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 508 702 IPR045168 -
Cla06g00400 720 MobiDBLite consensus disorder prediction 132 168 - -
Cla06g00400 720 ProSiteProfiles YTH domain profile. 334 475 IPR007275 GO:0003723
Cla06g00400 720 Gene3D ph1033 like domains 316 465 - -
Cla06g00400 720 PANTHER OS03G0317000 PROTEIN 508 702 - -
Cla06g00400 720 PANTHER OS03G0317000 PROTEIN 1 464 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00400 K20102 YTHDF; YTH domain-containing family protein - csv:101206750 1278.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01405 Cla-Chr3:29556530 Cla06g00400 Cla-Chr6:4917266 5.65E-90 dispersed
Cla06g00400 Cla-Chr6:4917266 Cla08g00164 Cla-Chr8:3191190 1.28E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g227 . . . . . Bpe14g01080 . . . . . . . . . . . . . . . . . . Cla06g00400 Cam06g0422 Cec06g0429 Cco06g0429 Clacu06g0408 Cmu06g0408 Cre06g1188 Cone14ag0687 Cone15ag0700 . . . . . . . . . . . . Bma02g00945 . Sed08g1182 . . . . . . Cpe12g00344 . Bhi12g01981 Tan06g2807 Cmetu02g1103 . . . Lcy12g0894 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004548 2 2 2 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00400 Cla_Chr06 FPKM 32.198334 32.128494 27.805265 22.86647 17.114861 18.265575 15.922794 25.005291 23.666527 22.951971