Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00401 ATGGCCAGCAATAAGCCTATTGCACCAAAGGAAGAGGTCTTTGATTTCAGGTTGCCTCCTGATCGGATGTACTCGAGGCATGTTGGGGACACTGGTGCAAGCTCATCTGGAAGTAATATAAGGGCATTCTTCATAGATATGGGATTCCTGCCATCCCTTGTTGATAAAGTGATTGAAGAAAATGGTGAAGATGATGTAGAATTGTTATTAAATACCCTGACTACATTTTCGGCAGAACAAAAATCAACTCCTGAGTCATCAGATTCTCTTGATGGCTTACGAAGTGGTAAAAAGGGCAGTAATCCTCCACATTTTTCTAAAATCTGTCATAAGCAGACAACCAAAGTATTGAAAACAATGTTTAGTTTCATTAAGCTTTTCATCTCAATAACATATCTTGGAATTTTCATTGTTCCATGGGTTGCTGTGGAGTCCCTACAGACGTCAAAATCTGAATCATCAGATTCTCTAGATAGCTTATTTGATGACAAGGATGCACACAATGAAATCTCTTCAGTTGTTATACCAAAGGAGGAGGCTGATGATTATTATGATGCTAATGATACCAACAAAGCATCCTTATTAATGATGAACTTTACTGTCGATGAAGTTGACTTTGCGATTGATAAGCTTGGTGGAGATGCTCCCATTAATGAATTGGTGGATTTTATCATCGCTGCACAGATTGCTGAAAATTTGGAGAAGGAAACAGATGATGTTACATTCTGTAGAAATGAATTGAAAAAGGAGGAAAATGATGAAACCTTGTTTGTGACGATGGAGAAAACACTTCGCTTGCTTGAAATGGGCTTCTCTGAGAATGAGGTTTCTTTGGCAATTGAAAAGTTTGGTTCGGAAACTCCAGTTGCGGAGCTTGCCGATTCCATTGTTACAGGTCGAATTGCTGGTGACTACCCTGGGAATGTTAAGTGTTCCCCAAACTCGTTTGGCATTGGTGGCTTACATACTTCAGAAGATTATATGACTAAAGTTAAAGCTGAAGAATCCAGTTCCGCTGGTGTTTCTCTGCCAAGAAATGTTAACATTGAGGAAATACTGAAAGGGAAAAGGCCAAAAGAAGAAAATATGGATGACCTTCTGAATCCTATTCCTCGTTTTGATGTTAATAAACATAAAGGGAAAAGGCCAAAGCAAGAATATGCCGATGACTTGAGTTCTCTATATGGTCCTGGATGGGTGGAATCAAAAGTCAATCCAAACATCACCAGATTTGACATTCCCCCACCTTCAAAACTAAATCTCTCAAGAAGTCTTGATAAGTTGGTGGCTAAGCCTCCATCCCCACCTTTAAGATTAAATCCTTCTAGAAGTCTTGATAAGATGGTGGCTAAACCTCCATTTTTCTTGTATGGAAATGTTTTGGATATAGCTCGCGATTCTTGGGAAAAAGTTTCCAAGTTCCTATATGCCATTCAGCCTGAATTCGTGGACACTCGGTCCTTCTCAGCGTTGAGTAGAACGGAAGGCTACGTGCACAATCTTCCATGTGAGAACAGGTCTCACATCCTTCCGATGCCTCCAATGACCGTCCAAGATGCGACACGTACAAAAAAATGGTGGCCATCTTGGGATACAAGGAAGTATTTGAGCTGCATCAATTCTGAAACTAGAGGAGTATCTCAGCTGTGTGATGGGCTGACAAAGACACTGACCGATTCTCACGGCCGACTCTCATCTCAACAGCAGAGAGATATTCTTCATCATTGCATAGCTTTGAACCTTATTTGGGTCAGCCAGTCCAAACTGGCTCCTATAGAGCCTGAACAGCTAGAATGCGTGCTTGGCTACCCGGTAAATCACACCCAAGATGCTGAAAGTAGCTCAATGGAAAGGCTTCAATATCTCAAGTATTGTTTTCAGACAGACACTTTGGGTTATCATCTATCTGTTTTGAAGCCTATGTTCCCAGAAGGGTTGATTGTGTTGTCCATTTTCAGTGGAATTGGTGGGGCGGAAATTGCTTTGCACCGTCTTGGCATTCGTTTGAAAGTCGTGATCTCGGTTGAGAGTTCAGCAGCAAAGAGGAGGATTTTGAAGAAATGGTGGCATAGTAGTGGACAAACTGGGGAACTGGAGCAGATAGAGGACATACAGAAACTAACAAGCAACAAGATTCACAATTTGATTAAGAAATATGGTGGTTTTGATTTGGTCATTTGTCAGAATCCTTGTTCTCGTTGTTTGTCATCTTCAAAACTGAATCAGAGTGGAGACGCTGAGGGTATAGCAAGTTTTGATTTCTCTATATTCTATGAGTTTGTCCGTGTTTTGCAGGGTGTAAGGAATACCATGGAAAGAAAGAAGTGA 2328 40.94 MASNKPIAPKEEVFDFRLPPDRMYSRHVGDTGASSSGSNIRAFFIDMGFLPSLVDKVIEENGEDDVELLLNTLTTFSAEQKSTPESSDSLDGLRSGKKGSNPPHFSKICHKQTTKVLKTMFSFIKLFISITYLGIFIVPWVAVESLQTSKSESSDSLDSLFDDKDAHNEISSVVIPKEEADDYYDANDTNKASLLMMNFTVDEVDFAIDKLGGDAPINELVDFIIAAQIAENLEKETDDVTFCRNELKKEENDETLFVTMEKTLRLLEMGFSENEVSLAIEKFGSETPVAELADSIVTGRIAGDYPGNVKCSPNSFGIGGLHTSEDYMTKVKAEESSSAGVSLPRNVNIEEILKGKRPKEENMDDLLNPIPRFDVNKHKGKRPKQEYADDLSSLYGPGWVESKVNPNITRFDIPPPSKLNLSRSLDKLVAKPPSPPLRLNPSRSLDKMVAKPPFFLYGNVLDIARDSWEKVSKFLYAIQPEFVDTRSFSALSRTEGYVHNLPCENRSHILPMPPMTVQDATRTKKWWPSWDTRKYLSCINSETRGVSQLCDGLTKTLTDSHGRLSSQQQRDILHHCIALNLIWVSQSKLAPIEPEQLECVLGYPVNHTQDAESSSMERLQYLKYCFQTDTLGYHLSVLKPMFPEGLIVLSIFSGIGGAEIALHRLGIRLKVVISVESSAAKRRILKKWWHSSGQTGELEQIEDIQKLTSNKIHNLIKKYGGFDLVICQNPCSRCLSSSKLNQSGDAEGIASFDFSIFYEFVRVLQGVRNTMERKK 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4928225 4934126 + ClCG06G004300.2 Cla06g00401 274593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00401 775 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 641 732 IPR029063 -
Cla06g00401 775 MobiDBLite consensus disorder prediction 80 106 - -
Cla06g00401 775 Gene3D Vaccinia Virus protein VP39 639 775 IPR029063 -
Cla06g00401 775 PANTHER DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED 144 774 - -
Cla06g00401 775 PANTHER DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED 4 117 - -
Cla06g00401 775 PANTHER INACTIVE DNA (CYTOSINE-5)-METHYLTRANSFERASE DRM3-RELATED 144 774 - -
Cla06g00401 775 PANTHER INACTIVE DNA (CYTOSINE-5)-METHYLTRANSFERASE DRM3-RELATED 4 117 - -
Cla06g00401 775 Coils Coil 233 253 - -
Cla06g00401 775 MobiDBLite consensus disorder prediction 80 94 - -
Cla06g00401 775 ProSiteProfiles SAM-dependent methyltransferase DRM-type domain profile. 441 774 IPR030380 GO:0006306
Cla06g00401 775 MobiDBLite consensus disorder prediction 363 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00401 - - - bhj:120092586 1350.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00401 Cla-Chr6:4928225 Cla10g01338 Cla-Chr10:28355171 8.71E-95 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g226 . Blo12g00378 Bda03g00829 . Bpe04g00786 . Bma04g00728 . . . . . . . . . . . . . . . . . Cla06g00401 Cam06g0423 Cec06g0430 Cco06g0430 Clacu06g0409 Cmu06g0409 Cre06g1189 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01980 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006515 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00401 Cla_Chr06 FPKM 34.307457 35.466099 51.640049 45.054512 66.08313 50.711075 63.780884 63.447437 63.824413 70.114883