Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00403 ATGGTAGCTGAAGCTGAGATCAAATGCCCCAAAACCGTTCCTCTCGTGAAAATCAACTATCATCTTTGCGTAACCGATGATCGCGATCTTGAGATCCATTTGCCGCACCCTTCTTCCTCACCTGTTTTTCCCGAGGCAGTTAGTTGTTCAGATATTGTTGAAGATGTGCATATAAAATCAACTGCCATAGGTTTTGTTCCAAACATTCGATCTGGTAGCTATGCAGACATTGGAGCTCGAGATTCTATGGATGATGAACATGTCTGCATTGATGACCTGTCTGCCCACGTTAGATCTATGTTCAAATGTTCTATGCCTAATGGTTTCTATGCTGTTTTTGATGGTCATGGAGGGCCTCATGCAGCTGCTTTTGTCAAGAGGAATGCCATGAGATTATTCTTTGAAGATGCCGATTGGTTAAAAATGCAGGACATTGATTCTATTTCTTTGAAAGATTTGGAGAACTCTCATCGCAAAGCATTTCAATTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTAGCAGCTCGTGCGGGACAACTGCGTTGACTGCGTTGGTCCTTGGGAGGCATTTGCTTGTTGCAAATGCCGGTGATTGCCGAGCAGTCCTATGTAGGAAAGGTGTAGCAGTCCCAATGTCTGAAGATCACAGGCCTTCTAATTTACTTGAGCTCAAGCGAGTGGAAGGGATGGGTGGTTTCGTAGATGATGGATATGTTAATGGCTATATTTCAGTAACCAGGACCTTGGGGGATTGGGATCTGAAATTGCTAAATGGCTCCTCATCACCTCTCATTGCTGAGCCACAAGTGGAGCATGTTATTTTAACAGGCGATGATGAGTTCTTGATTCTCGGCTGTGATGGGATTTGGGACGTAATGTCAAGCCAATATGCTGTCAGTCTCGTTCGACGTGGGTTGAGGAAGCACAATGACCCTCATCAAAGTTCCCGAGAATTAGTCCAGGAAGCTTTGCGCCTCAACACATCAGATAATCTTACTGCAATTGTAATCTGCTTTTCTTCTCCGAATTGCGTTCCCCAGCAGCGAATATGCAAGTCGTGTAATCTGACCGAAGAGGCTACAAATAGATTGAGGAGCTTGTTAGAAGGTAACTGA 1119 44.59 MVAEAEIKCPKTVPLVKINYHLCVTDDRDLEIHLPHPSSSPVFPEAVSCSDIVEDVHIKSTAIGFVPNIRSGSYADIGARDSMDDEHVCIDDLSAHVRSMFKCSMPNGFYAVFDGHGGPHAAAFVKRNAMRLFFEDADWLKMQDIDSISLKDLENSHRKAFQLADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGVAVPMSEDHRPSNLLELKRVEGMGGFVDDGYVNGYISVTRTLGDWDLKLLNGSSSPLIAEPQVEHVILTGDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSRELVQEALRLNTSDNLTAIVICFSSPNCVPQQRICKSCNLTEEATNRLRSLLEGN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4945314 4950158 + ClCG06G004320.1 Cla06g00403 274595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00403 372 SUPERFAMILY PP2C-like 59 342 IPR036457 -
Cla06g00403 372 SMART PP2C_SIG_2 85 340 IPR001932 -
Cla06g00403 372 SMART PP2C_4 60 338 IPR001932 -
Cla06g00403 372 Gene3D - 52 344 IPR036457 -
Cla06g00403 372 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 353 - -
Cla06g00403 372 ProSitePatterns PPM-type phosphatase domain signature. 109 117 IPR000222 GO:0043169
Cla06g00403 372 Pfam Protein phosphatase 2C 78 332 IPR001932 -
Cla06g00403 372 PANTHER PROTEIN PHOSPHATASE 2C 1 353 IPR015655 GO:0004722|GO:0006470
Cla06g00403 372 CDD PP2Cc 69 340 IPR001932 -
Cla06g00403 372 ProSiteProfiles PPM-type phosphatase domain profile. 70 340 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00403 Cla-Chr6:4945314 Cla11g01835 Cla-Chr11:31986111 6.05E-102 dispersed
Cla06g00561 Cla-Chr6:6804192 Cla06g00403 Cla-Chr6:4945314 4.90E-15 transposed
Cla06g01440 Cla-Chr6:27976647 Cla06g00403 Cla-Chr6:4945314 1.39E-24 transposed
Cla06g00403 Cla-Chr6:4945314 Cla09g00444 Cla-Chr9:4222654 2.61E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61242 PF00481 PP2C 1.70E-64 CL0238 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00403 K14803 - csv:101207477 691.804