Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00404 ATGGCGACCACCAACAACCTCCACGGCTCTGATACTGTGAATGAAATGCCTACGGAATTAGCTAAAGAAGGATCTGCTCTTATGAGTTCAGAGGGAAAGGCCAATGACACAGAAATAAAAGCACGTGTTGATTCGATGTGGGAGCAAATGAATAAAGGGGTGTCTAGTAAAACACTAAAAGGTTTGTCAGCCAAACGATCCCCAGCTGGGAATAAAAACTCAAAGAAGCCATCAAATAATTGGATTGCATATCTTGGTATGGCGTCAAAGAAGCCTCAAGAAAAAGAAATATTATCAGAAGGATCCAAGGTTCTGCAGAACAGTTCTACTGATGATGCTAAGATGCTTGCTGCTACTGCTCTCTCAGCTGTTAGGGATGCTACAGCTACCATTTCCGACAGGGGGAAAGTTGAGATCACAGAGATTAGGGACTTTGCAGGCCAAAATATTGAAATTAAAAAGTTTGTAGATGCTGATTCAAAGGAAGCACAAGAGAAAATGAAGGCACCTGCTACTTCAGCTGTCGATGTAGTCCTGGAACAAATCAAGAAGAAACAAAAGCTTAGTGTTCTTGACAAGACAAAAAAGGACTGGGGAGAGTTCAAAGAAGAAAACAAGGGCCTGGAAGAGGACTTGGATGCTTACAAGAAGAGCTCAAACCAATATCTTGATAAAGTTTCCTTTTTGCAACGAACTGATTACAGGGAGTTTGAACGAGAGAGGGATGCTCGGTTGGCTTTGCAGGCCAGGAGAAGACCGGATATGCGAGAGGAGCCATAA 780 42.82 MATTNNLHGSDTVNEMPTELAKEGSALMSSEGKANDTEIKARVDSMWEQMNKGVSSKTLKGLSAKRSPAGNKNSKKPSNNWIAYLGMASKKPQEKEILSEGSKVLQNSSTDDAKMLAATALSAVRDATATISDRGKVEITEIRDFAGQNIEIKKFVDADSKEAQEKMKAPATSAVDVVLEQIKKKQKLSVLDKTKKDWGEFKEENKGLEEDLDAYKKSSNQYLDKVSFLQRTDYREFERERDARLALQARRRPDMREEP 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4952711 4956352 - ClCG06G004330.1 Cla06g00404 274596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00404 259 MobiDBLite consensus disorder prediction 1 36 - -
Cla06g00404 259 ProSiteProfiles Bucentaur C-terminal (BCNT-C) domain profile. 169 250 IPR011421 -
Cla06g00404 259 PANTHER BUCENTAUR RELATED 30 258 IPR027124 -
Cla06g00404 259 Coils Coil 205 225 - -
Cla06g00404 259 Pfam Bucentaur or craniofacial development 173 246 IPR011421 -
Cla06g00404 259 PANTHER SWR1-COMPLEX PROTEIN 5 30 258 - -
Cla06g00404 259 MobiDBLite consensus disorder prediction 51 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00404 - - - csv:101207966 458.759
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g217 Blo01g00027 . . . . . . Bma05g00989 . . . . . . . . . . . . . . . . Cla06g00404 Cam06g0426 Cec06g0434 Cco06g0433 Clacu06g0412 Cmu06g0412 Cre06g1192 Cone14ag0692 Cone15ag0706 . . . . . . . . . . Bpe05g00796 . . . . . . . . . . Cpe12g00342 . Bhi12g01968 . . . . . Lcy12g0888 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007922 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 0 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00404 Cla_Chr06 FPKM 40.963905 40.960377 44.047821 41.795525 49.049423 48.038742 52.817623 87.68042 85.826286 82.024643