Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00408 ATGTTCTTCACGGGCGATTCATCTACTCGCAAGCGAGTTGATTTAGGTGGCCGGAGTTCCAAGGAAAGAGATAGGCAGAAGCTTCTTGAGCAGACTAGATTGGAGCGGAACCGCCGATTGTCCTTGAGACAGCAAAATTTTGCTGCTCTCAAAATTCAGAAATGCTTCAGAGGGAGAAGGGCCTCTGAAGCTGCATGTTTTAGGGTGCGAGAGCAATTTCATGATACTTATGGAAAGCATTGTGAGAAAGTTGACAGGCATTGTTTTGGTCCTGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTATGATGCAAAGCACACTGGTGATTTTTCGGTTCTTGTAGAGGCTTGCCGGTTACTTCGGCAATTTGTTCAAGACAATGGGGACATGTTGAGCATCTTTGCTGGCAAGGATTATTTATCTAACAAGGCCTTGGTGGATTACAGAGTTAAAAAATTTGCATATGCTTGCATCCAGACTGTACATCATAATAGAAACCAATTGAGGAATCAACTTTTTGCTGTTCCTGAGAACAATAGCACACCTGCGACTTTATTGTTAGACACAATTGTTTTCTTATTACAACCCGAACTCCCATGGGTTTGTAAAATTGTTGGCTACTTTCTGGAAAGAAATGCATATGCGTTGATTAGGGATATCACTTTGACAGGGAAGGAAAGTGCAAATTCACATCCCAAAAGTTCAGTGGCTTCTTTAGAACATGTGCTTTCTCTTTTGAGTTCTCATGTTGGTGAGAAGCCTTGCTGTTGCCCGCGCGTTGATCCCAATTGGAGTTTCTCCTCCCAAATTCTTACTCTTCCTTTACTGTGGCAGACATTCCCTTACTTAAAGGAGGTTTTCGCTAGATGGGGGTTGATTGGACATTACATTCATCAGATGGCATCGTGTGTTCAACATTATGCAAATATACTCCCAAAGGATGTTACAGCTGACATTCCTGGCTATGCTTGCCTTCTTGGAAATGTATTGGAAATTTCCAGATCTGCTCTATCTCAGCCTGACTGCTCATCCGAATTGGCAATAGATCTTGCTTCTGTCACGACATTCTTGTTGGAATTACTTCCGTCGATGAAATCACCTCTTAGATATATGCCGTCAATAGGTGCTGCATTGGGTGATGACGATGTGGTTGTGTCCGATCAAGATACAGAGTTGGCATTGAATAAAGATGTTGAGAAGCAGATATGTGATGCTATTGATCCACGATTTCTCCTGCAGTTGGCAAATGCTTTATTTGGACAGATTTCACGAGTTAGTGGCCCTTATGATGGTCCTGATGATAAAGAAGTCAAAGCTGTTGGTACAGCCTGTGCTTTTCTGCATGTCACTTTCAATACCCTACCTCTGGAGCAAATTATGACTGTTTTAGCATACAGAACGGAGTTAGTTCCAGTACTTTGGAGTTTTATAAAAAAGTGCCATGAGAATCAAAAATGGTCGTCCTTTTCAGAGAAGTTGGCATATTTATCAGGAGATGCACCTGGTTGGCTATTACCTTTGGCTGTTTTCTGTCCCGTGTACAAGCAAGTTCTCTTGAAAGCCACCTGTAATTACAGTGCTGCAACGTCATGCTCGGTAGAAACTTTCGTGACGGTGTTTGCCCTATGGCAGCTTTTATGGGTGAGTCCAACAGCTCCTAGTAATTCTGCAAAACATGCTGCCAGTGCCCATGGAACTAAGAGGCACACCGTTGAATTCATTCAATACAGGGTTACAATTGTTGCCTCAGAGCTCCTGTCACAGTTGCAAGACTGGAACAATAGACGACAATTTACACCCCCCAGTGACTTCCATGCTGACGCTGTGAATGATTATTTCATTTCTCAGGCAGTGATAGAAAATACCAGAGCAAATGATATTCTTAAGCGAGCTCCCTTTTTAGTACCATTTACAAGCAGGGTTAAGATTTTCACTTCACAACTAGCAGCAGCAAGGCAAAGGAATGGGTCTCATGCAGTTTTTGCCAGAAACCGTTTTAGAATTCGACGAAATCATATATTGGAAGATGCTTTTAGTCAGATGAGTGCATTATCTGAAGATGATCTTCGAGGATCGATACGTGTGTCGTTTGTTAATGAATTTGGAGTTGAGGAGGCAGGAATTGATGGTGGTGGTATTTTCAAAGATTTCATGGAGAACATTACACGGGCAGCCTTTGATGTGCAGTATGGTTTATTTAAGGAAACAGCTGATCATTTGCTCTACCCCAATCCTGGTTCAGGAATGATACATGAGCAACATCTCCAATTTTTTCATTTCCTCGGAGTTCTTTTGGCAAAGGCCATGTTTGAAGGAATTCTTGTTGATATACCTTTCGCAACATTCTTCTTGAGCAAGTTAAAACAGAAGTACAACTATCTGAATGACTTGCCATCCTTGGATCCTGAATTGTATCGCCACCTTATTTTCTTAAAGAATTTTTTTCTCACTCCTTATGCCCTGGTCTTCCCATCTGATTTTTCTGGACAGCATTTTGAAGGTGATATTTCTGAACTGGAGCTATATTTTGTTATTATAAACAATGAATATGGAGAGCAAACAGAAGAAGAGCTACTCCCTGGAGGAAAAAACCGTCGTGTCACCAGTGAAAATGTCATCACATTCATTCATCTTGTTGCCAATCATCGTTTGAACTTTCAGATACGGCAGCAAAGTTCTCATTTCTTGAGAGGGTTTCAGCAGCTTATACAGAAAGAATGGATCGATATGTTCAATGAGCATGAATTCCAGCTTTTGATATCAGGTTCACTGGACAGCTTGGATGTTGATGACCTACGGACACATACTACTTATTCAAGTGGTTATCATAAAGAGCATTATGTCATTGAGATGTTTTGGGAAGTTATCAAAAGCTTCTCAGTGGAAAACCAAAAGAAATTTCTGAAGTTTGTAACTGGTTGCTCTCGAGGACCGCTTCTTGGCTTTAAATATCTTGAGCCATGTTTTTGCATACAAAGGACTTTGCGAGGCATTCCTGGCTACATGCCGGAAACTGACCTACAAGGACAGTTGGCTGCTGGTAATGCAAATGAAGAAGCTCTTGATCGCTTACCTACATCGGCTACTTGTATGAATCTTTTGAAGCTTCCACCCTATAGAAGCAAGGAGCAGCTGGCAAACAAATTGCTTTATGCTATAAATGCAGATGCTGGTTTTGATCTAAGCTAA 3192 41.42 MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRRASEAACFRVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYDAKHTGDFSVLVEACRLLRQFVQDNGDMLSIFAGKDYLSNKALVDYRVKKFAYACIQTVHHNRNQLRNQLFAVPENNSTPATLLLDTIVFLLQPELPWVCKIVGYFLERNAYALIRDITLTGKESANSHPKSSVASLEHVLSLLSSHVGEKPCCCPRVDPNWSFSSQILTLPLLWQTFPYLKEVFARWGLIGHYIHQMASCVQHYANILPKDVTADIPGYACLLGNVLEISRSALSQPDCSSELAIDLASVTTFLLELLPSMKSPLRYMPSIGAALGDDDVVVSDQDTELALNKDVEKQICDAIDPRFLLQLANALFGQISRVSGPYDGPDDKEVKAVGTACAFLHVTFNTLPLEQIMTVLAYRTELVPVLWSFIKKCHENQKWSSFSEKLAYLSGDAPGWLLPLAVFCPVYKQVLLKATCNYSAATSCSVETFVTVFALWQLLWVSPTAPSNSAKHAASAHGTKRHTVEFIQYRVTIVASELLSQLQDWNNRRQFTPPSDFHADAVNDYFISQAVIENTRANDILKRAPFLVPFTSRVKIFTSQLAAARQRNGSHAVFARNRFRIRRNHILEDAFSQMSALSEDDLRGSIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGVLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKNFFLTPYALVFPSDFSGQHFEGDISELELYFVIINNEYGEQTEEELLPGGKNRRVTSENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKEWIDMFNEHEFQLLISGSLDSLDVDDLRTHTTYSSGYHKEHYVIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGFKYLEPCFCIQRTLRGIPGYMPETDLQGQLAAGNANEEALDRLPTSATCMNLLKLPPYRSKEQLANKLLYAINADAGFDLS 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4985504 4998146 - ClCG06G004370.1 Cla06g00408 274600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00408 1063 MobiDBLite consensus disorder prediction 1 24 - -
Cla06g00408 1063 SUPERFAMILY Hect, E3 ligase catalytic domain 661 1055 IPR035983 GO:0004842
Cla06g00408 1063 Gene3D Hect, E3 ligase catalytic domains 667 923 - -
Cla06g00408 1063 CDD HECTc 665 1061 IPR000569 GO:0004842
Cla06g00408 1063 SMART hect_3 684 1063 IPR000569 GO:0004842
Cla06g00408 1063 ProSiteProfiles HECT domain profile. 686 1063 IPR000569 GO:0004842
Cla06g00408 1063 PANTHER BNAC01G43970D PROTEIN 1 1063 - -
Cla06g00408 1063 Pfam HECT-domain (ubiquitin-transferase) 722 1063 IPR000569 GO:0004842
Cla06g00408 1063 Gene3D Hect, E3 ligase catalytic domain 791 888 - -
Cla06g00408 1063 Gene3D Hect, E3 ligase catalytic domain 927 1062 - -
Cla06g00408 1063 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1063 IPR044611 GO:0000209|GO:0061630
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00408 K10589 UBE3C; ubiquitin-protein ligase E3 C [EC:2.3.2.26] - csv:101218340 1890.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00408 Cla-Chr6:4985504 Cla10g01860 Cla-Chr10:34500005 4.29E-90 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g27 Blo01g00043 . . Bda08g00320 . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 . . . . . Csa06g01841 Chy11g01595 . . . . . Bpe05g00808 . . . Sed09g0619 . . . Cma17g00387 . Car17g00357 Cpe12g00338 . Bhi12g01956 Tan06g2787 Cmetu11g1561 . Hepe03g0028 . Lcy12g0884 . . . . . . . Lsi09g01511 . . Cme11g02100
Vvi5g151 . . Bda03g01133 . Bpe04g01076 . . . . . . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g213 Blo01g00043 . . . . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 Cone14ag0699 . . . . . . . . . . . Bpe05g00808 . . . . . . . Cma17g00387 . Car17g00357 . . . . . . . . . . . . . . . . . . . Cme11g02100
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010669 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00408 Cla_Chr06 FPKM 65.863297 74.712631 92.37484 90.392799 11.259452 9.309868 12.392097 44.633633 45.039776 44.256832